Pmet012285.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- zfy1
- Assembly
- GCA_905147745.1
- Location
- LR990545.1:3679650-3686453[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.9 2.7e+02 3.1 2.9 1 23 115 138 115 138 0.93 2 20 0.071 6.4 8.2 0.2 2 23 165 187 164 187 0.94 3 20 0.025 2.3 9.6 0.6 2 23 210 231 209 231 0.96 4 20 0.027 2.4 9.5 0.1 1 23 235 257 235 257 0.96 5 20 0.013 1.2 10.5 5.6 1 23 262 285 262 285 0.98 6 20 0.00057 0.052 14.7 0.7 1 23 291 314 291 314 0.96 7 20 2.9e-06 0.00027 21.9 2.5 2 23 322 344 321 344 0.97 8 20 0.0042 0.38 12.0 4.5 1 23 350 372 350 372 0.97 9 20 0.00081 0.074 14.3 0.3 1 23 378 400 378 400 0.99 10 20 3.5e-05 0.0032 18.5 0.7 1 21 406 426 406 426 0.96 11 20 0.23 21 6.5 0.4 3 23 498 519 496 519 0.91 12 20 0.014 1.3 10.4 0.1 2 23 545 567 544 567 0.93 13 20 0.0065 0.6 11.4 0.4 2 23 590 611 589 611 0.97 14 20 0.00033 0.03 15.5 0.1 1 23 615 637 615 637 0.98 15 20 6.3e-05 0.0057 17.8 2.8 1 23 642 665 642 665 0.98 16 20 0.2 19 6.7 0.8 2 23 673 695 672 695 0.93 17 20 0.00059 0.054 14.7 4.1 2 23 703 725 702 725 0.96 18 20 0.00017 0.015 16.4 2.4 1 23 731 753 731 753 0.98 19 20 3.1e-05 0.0028 18.7 0.6 1 23 759 781 759 781 0.99 20 20 7.1e-05 0.0065 17.6 3.8 1 23 787 810 787 810 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAGGAAACGCCGGGAGGGGAAGCCCCAGAAGGACATACACTGACCTTGTCGGTGATGTTCTTTAAAAAGGTCAGGTGCGTAGTACTCGCAACTGGCGTGCGTGTACGGATTACTCGAGTACAAAAAGTCGCAATTAAACAAAAAGCCGACCAAACAGAAACAGAGAACAGCGTTACTCCTCTGACTGAAGCTGGTGAAAGTGGGGCCAGCCTTGAACCAGAAACTCCTGCAGTGTCAAAATTGTCCGCTGGAGAAGTCCACAAACACAAACAGAATATTATAGAGATAATGCGTTGGTCCAACGCTACACCAATAAAACAGTGGGGAGATATGGGTTACATGTGCTGTCATTGCGAAGACCAATTCCTAGATCCGGCAGATCTCAAGAAACACACCCTACAAACTCATGAAGACATCACCAAAGCTTACTTCATAACTAACATGAGCATGTACCAATACGTCGTAAAATTAGACATCACCGATTTGCAGTGCAATTTATGTGACAAATTTATGGACACAACTGAAGAATTAATGGATCACTTGAAAGATGATCATTTTATGGAAATATACACTGAAATCAAAAATCACATCGTACCTTTCAAGTTTAATACGAAATCTCTTGAATGTTTCATTTGCAAATCTGCCTTCAACAAGTTCAAATTATTACTGATTCATATGAATTTACACTACAGGAACTATATTTGTGATATCTGCGACTCCGGTTTCGTAAATAGCCTGAGCATGAGGATACATAAAGCCTCGCACCAAATTGGAAATTTCACCTGCGATTTTTGTCATAAGAAATTCAAAACAATAGCTTCTAAAAGTCGGCATGTAAAGACAAAGCATATCAAAGTTCTTATTTACAAATGTGGGTACTGTGATGAAACTTTTAACGATTATAGACAGAAGGAAACTCATCTGATATCTGCACATCGGATGAGTACGGAAAAGTCGAAATGCCAAGAGTGCGATAAAGTATTTAAGCACCAAAAAAACTTGGCTATGCACGTGAGAAGAGATCACTTATTGGAACGATCCCACGTTTGCGCAGAGTGTCAAAAGTCATTTTTCTCTTCAAATGACCTGAAATGTCATATGCTGACGCACAAAGGGGCAAAACCTTTTAAGTGTGGAATTTGTTCCAAGTCTTATGGAACGGCGAAAATTTTAAAAGGGCATATGAGGATCCATAATGAAGATAGGCGTTATAAATGCTCACATTGTGGGCGGGAATTCGTTCAAAAAATCACCTTGATAAATCATTTGAAATGTCGCGGACGGGGTACTAGGATAATCAAAATAGAAAGATCGACAAAATCATCCGTAGAATTGAAGTTCATCTCCAAAGTAACATCGAGAGAACCAAATGACAATATAAAAGGCTCAATATCAGAAACTGTTAAGAACAAAATGAATCTAAAAAATATATTGCTTAACTCTAACGCGAACCCAATAAGATGTAAAGATAGCCATGGATATGGCTGTTCTTTCTGTCCAAAACAATTTCAAGAGCCAACCGTTCTCAAGAAGCACTTTCTGGAAGAACACAACAATGACAAACTTATTAAGTATATGTCCGCGAAGCTTTTAGATCATGTCATCAAGTTAGATATAACGTTCTTGAATTGTGCTCTTTGCGACAAAGACGTCAAGCATTTAGACGACCTCGTTGCACATCTGAAGGCCGACCACAATAAGCCGATGTATTTAGATGCCAAAAGCCAAATCGTCCCGTTTAGATTCGACTCGCCCGAACTAAAATGTGTTATGTGCTCAGCAGAATACAGTTCATTTAAACTTTTACAGGAACATATGAATTCACATTATGGTAATTATGTTTGTGACGTATGTGGAGCTGGATTTGTGACTTATAGACTACTAGTGAGCCATGTCAAAAGGCATGATAGCGGAGAGTATAAATGTGATCAATGCGACAAAACTTTTACAAATCAGATTAAAAGACGCGAACACATAAAGCGGACTCACCTGGGTATGAGCAAAAGAAACAAATGCAATTACTGTACGGAAAAATTCGGTGATTACTGGAAAAAGATGGATCATATGGTGAAAGAGCATGGTATGCCTCCTGTCGTACTTCAATGTTCCGCTTGTGATCGAACTTTTAGTAACCAAAGGTGTCTATCCCGGCATACGAAGAAAGATCACCTTATGGAGAGAAGTCACAAGTGTAGCGAATGCGAAATGAGGTTCTTTGGAAAGAGTGGTTTGCAAAAGCACATGGCAAAACACACGGGGCTAAGACAGTTCAGATGTGAAGTATGTTTAAAAGCTTATGGCAGAAAGAACACGCTAAGAGAGCATATGAGGATCCATACGAATGATAGGAGATTCGCTTGCGATCACTGTGGTCAAGCATTTGTCCAGAAGTGTAGTTGGCGGAGTCACATGCGTTCTAAACACGGGGAACAAGTGTAG
- Protein Sequence
- MKEETPGGEAPEGHTLTLSVMFFKKVRCVVLATGVRVRITRVQKVAIKQKADQTETENSVTPLTEAGESGASLEPETPAVSKLSAGEVHKHKQNIIEIMRWSNATPIKQWGDMGYMCCHCEDQFLDPADLKKHTLQTHEDITKAYFITNMSMYQYVVKLDITDLQCNLCDKFMDTTEELMDHLKDDHFMEIYTEIKNHIVPFKFNTKSLECFICKSAFNKFKLLLIHMNLHYRNYICDICDSGFVNSLSMRIHKASHQIGNFTCDFCHKKFKTIASKSRHVKTKHIKVLIYKCGYCDETFNDYRQKETHLISAHRMSTEKSKCQECDKVFKHQKNLAMHVRRDHLLERSHVCAECQKSFFSSNDLKCHMLTHKGAKPFKCGICSKSYGTAKILKGHMRIHNEDRRYKCSHCGREFVQKITLINHLKCRGRGTRIIKIERSTKSSVELKFISKVTSREPNDNIKGSISETVKNKMNLKNILLNSNANPIRCKDSHGYGCSFCPKQFQEPTVLKKHFLEEHNNDKLIKYMSAKLLDHVIKLDITFLNCALCDKDVKHLDDLVAHLKADHNKPMYLDAKSQIVPFRFDSPELKCVMCSAEYSSFKLLQEHMNSHYGNYVCDVCGAGFVTYRLLVSHVKRHDSGEYKCDQCDKTFTNQIKRREHIKRTHLGMSKRNKCNYCTEKFGDYWKKMDHMVKEHGMPPVVLQCSACDRTFSNQRCLSRHTKKDHLMERSHKCSECEMRFFGKSGLQKHMAKHTGLRQFRCEVCLKAYGRKNTLREHMRIHTNDRRFACDHCGQAFVQKCSWRSHMRSKHGEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -