Pmet024829.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- LR990547.1:6006035-6008371[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.9e-06 0.00036 21.5 4.2 1 23 8 31 8 31 0.95 2 19 0.0011 0.1 13.8 0.8 2 23 37 59 36 59 0.94 3 19 1.7e-05 0.0016 19.5 0.3 2 23 68 90 68 90 0.97 4 19 4.9e-05 0.0045 18.1 2.1 2 23 99 121 98 121 0.95 5 19 3.6e-05 0.0032 18.5 4.5 2 23 129 151 129 151 0.97 6 19 1.4e-05 0.0013 19.8 2.3 2 23 160 182 159 182 0.95 7 19 6.6e-07 6e-05 24.0 1.1 1 23 188 211 188 211 0.98 8 19 1.1e-05 0.001 20.1 0.2 1 23 252 275 252 275 0.98 9 19 0.027 2.4 9.5 1.9 1 23 300 323 300 323 0.96 10 19 1.1 1e+02 4.4 0.9 2 20 331 349 330 351 0.92 11 19 0.08 7.3 8.0 2.2 2 23 360 382 360 382 0.92 12 19 0.0018 0.16 13.2 6.1 1 23 404 427 404 427 0.97 13 19 7e-05 0.0064 17.6 0.7 2 23 434 456 433 456 0.96 14 19 6.7e-05 0.0061 17.7 2.5 2 23 463 485 462 485 0.94 15 19 0.0069 0.63 11.3 2.2 1 23 491 514 491 514 0.97 16 19 0.082 7.5 7.9 5.0 2 23 522 544 522 544 0.95 17 19 4.1e-05 0.0037 18.3 0.6 1 23 551 574 551 574 0.97 18 19 0.015 1.4 10.3 1.4 1 23 581 604 581 604 0.89 19 19 0.036 3.2 9.1 2.8 5 23 621 640 618 640 0.90
Sequence Information
- Coding Sequence
- ATGTATGAAAGTCAGTTAGATTTTGTGTGCGACTACTGCTCAAGGACGTTCACGAGGAAATACAACTTACAAACTCATATTGAAAACTGTCATATAAACTCGTCATGTCACTGCAACGTCTGCGGCCAAAATTTCGGCAGTCCAGCGGGTTTATTACAACACATATCTAGAGGCCACAACAACTACGGCCAGCCGTACCCAGAATGTGAACTTTGCGGGCGAATTTTTACCAGAAAACAGAATATAACGTCGCATATGATCACCGTCCATCTCCAAGGGCTTGGCTACGAAATTCGCTGTCGTTTGTGTAAGAAAACTTTTACAACGGGAAGAAATTTAAAGAGACATATCAACCAGTTGCACAATCCTAATGTTGAATATCCCACGTGTCACGATTGTCATAAAGTTTTTAAAGGGAAGCACTCTCTCATCGCTCACATCCAGTCGGTACACAGTGTGACCGAAAAAGACGCCATTAAGTGCCATCTCTGCGAAAAGGTTTACACTAACAATAGAAATTTGAAAAGGCACGTTGAAATGTTTCACGGTGAAAAGGGAGAGTTCAGGTGCGATATATGCCCAAAAGTGTACACGTCGAACCAAAGTCTGCGCCGGCATGCGCGCACGCGACACAATACTGACAACCAGGAACATTTGGCGTGTAGCTTTTGCATGAAAGTTATTATTGGTCGGGAGAACTTCGACAGCCATGTACAGTTCCACCATCTCGAAATGGATAGTAAAACCACCGAATTCGTCTGCGAGTCTTGCGGCAAAAGCTTCGAAGATGAACCTAGTTTGCGCCAACACGTCAAAACTGAGCATTCCTTTAAAACCTTTTACAAGTACTGCAAGAAATCCTTGCTCAAGCAATATGGGATGGACTCCCAGAACATATACAGTTGTGAATTTTGTGATCATTATTTTCTGACTGTCTACGAGCTCAAGGATCATATGCGAGCGAATCATGACACGGAGTACTCTCTATCGACTTGCAATGTGTGTTTCAATAAGTTTTTCAGTAAAGAGACAATGGCTGCCCATAGACATGTTTGTCTGCCACCTGCAAACGTGAATTCTTGCAGTCACTGCGATAAGCTCTTCACAGACGTCTCGAGTTTGGACTTCCATACCAGAATTTTCCATCCACAAGCTCAAATCGCTGATTCCAATATTTCATCAACCAACGTCGACGAAGAAACCGTCTCTTTCAAATGTCAGCATTGTGATCGCGTTTACTACAGCGACAGATCCCTAAAACATCATATCAAGTTGAAACACACAACTGACGAAGAAGTGGAATGCGAGATGTGTAACAAAATCTGTAGTAACAAGTACTACTTAGCTTCGCATATAAAAATCGTCCATAATACCGATTCTTGGTCCAGATGCGAATACTGTAACAAACAGTTCAAATCCAAAAGAAATATCAGGAGACATATTGAGTATACCCATCTGGGCATGCAAAGGTACAAATGTATTGAGTGCGAGACCCTGTTTAAAGAGAAACGGAGCTTAAGAAAGCATGTTAGGACCAAGCATCCTGACTCGGCAGCCTTTCCCCAATGCCACATTTGTCAAAAACGTTTTGAGTCGGCGAAATCTTGTAAGATACATCTGAAACTATTGCATTCTTTCAACATGAACACTTACCCGTGTCACTTATGCTCTGTATCCTTCAGTTCCAACGAAGCTTTGACCATACACCTGGAGACGAAGCATCTGGCAGAAGACCAGATCTACAAATGTGAGGAATGCAACCTCGTTTTCAAAGGGCAGGAGAAGTTTGACGCCCACAACGACGTCTGTCACGTCAACTTAGTGCCGACCATCAAGCAGAAGGTCCTCCCAAGATGCATTCTTTGCATGAAGGACTTCAGCACAAGGAAAACTTTAAAGCGTCACATCAAAAAGTTCCACGATGATTTTGATGTGGATGAATTGGCCACCTTCGGCTCAAGACGGCGCACTTTCACAGTGGACTGTGAGGATTGTATAAAAAGTTTCAATGACGACTACCTCTTTAATCTCTACAACAAGCTCAAACATTTGCGTGAATCTGAAGTATTTAAGTGTCAGACATGCTTTGAGTCGTACAACTCTATGGAGTTTGCTGTACAGAGGTACAAGATAAGAAATGCGGATGCTTGTAAGACCAAGATGATTTTAAGCGAACTCTGTACTATTGAGATGAGTGAAGAGGAGAATGATTACTCTGAATTTGGAGCCTTACATGACATGCTGCCTGAAAGCACGACTGCAGATCTTAGTATCAAGTTGGAACGAGTTGATAGCATCTCCGAGCCTGATATTAAGATGGAGCCGGCTTCGCCCTAG
- Protein Sequence
- MYESQLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCNVCGQNFGSPAGLLQHISRGHNNYGQPYPECELCGRIFTRKQNITSHMITVHLQGLGYEIRCRLCKKTFTTGRNLKRHINQLHNPNVEYPTCHDCHKVFKGKHSLIAHIQSVHSVTEKDAIKCHLCEKVYTNNRNLKRHVEMFHGEKGEFRCDICPKVYTSNQSLRRHARTRHNTDNQEHLACSFCMKVIIGRENFDSHVQFHHLEMDSKTTEFVCESCGKSFEDEPSLRQHVKTEHSFKTFYKYCKKSLLKQYGMDSQNIYSCEFCDHYFLTVYELKDHMRANHDTEYSLSTCNVCFNKFFSKETMAAHRHVCLPPANVNSCSHCDKLFTDVSSLDFHTRIFHPQAQIADSNISSTNVDEETVSFKCQHCDRVYYSDRSLKHHIKLKHTTDEEVECEMCNKICSNKYYLASHIKIVHNTDSWSRCEYCNKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPDSAAFPQCHICQKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALTIHLETKHLAEDQIYKCEECNLVFKGQEKFDAHNDVCHVNLVPTIKQKVLPRCILCMKDFSTRKTLKRHIKKFHDDFDVDELATFGSRRRTFTVDCEDCIKSFNDDYLFNLYNKLKHLRESEVFKCQTCFESYNSMEFAVQRYKIRNADACKTKMILSELCTIEMSEEENDYSEFGALHDMLPESTTADLSIKLERVDSISEPDIKMEPASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- -
- 80% Identity
- -