Pmet012301.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- LR990545.1:3809035-3813350[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.13 12 7.3 0.9 1 23 41 63 41 63 0.95 2 28 0.071 6.5 8.2 0.0 2 23 91 113 90 113 0.94 3 28 5.1e-05 0.0047 18.0 0.7 2 23 134 156 133 156 0.96 4 28 0.00052 0.048 14.9 3.6 1 23 161 183 161 184 0.95 5 28 4e-05 0.0036 18.4 0.9 1 23 188 211 188 211 0.94 6 28 0.078 7.2 8.0 0.4 2 23 214 236 213 236 0.95 7 28 0.085 7.8 7.9 0.9 2 20 242 260 241 265 0.90 8 28 0.0036 0.33 12.2 2.6 2 23 310 332 309 332 0.94 9 28 1.9 1.7e+02 3.7 0.5 2 23 361 383 360 383 0.94 10 28 0.0037 0.34 12.2 0.0 1 23 405 428 405 428 0.92 11 28 9.6e-05 0.0088 17.2 0.9 1 23 433 456 433 456 0.94 12 28 0.015 1.4 10.3 0.4 1 23 462 485 462 485 0.94 13 28 0.00034 0.031 15.4 0.8 2 23 491 513 490 513 0.97 14 28 0.0024 0.22 12.8 4.4 1 23 517 540 517 540 0.97 15 28 0.0026 0.23 12.7 3.2 1 23 594 616 594 616 0.96 16 28 0.022 2 9.8 0.1 3 23 645 666 645 666 0.98 17 28 0.0045 0.41 11.9 0.8 1 23 686 709 686 709 0.96 18 28 3.5e-05 0.0032 18.5 0.5 1 23 714 737 714 737 0.96 19 28 0.0013 0.12 13.6 0.8 1 23 742 765 742 765 0.96 20 28 0.001 0.091 14.0 0.9 3 23 769 790 768 790 0.95 21 28 0.011 1 10.6 2.6 1 22 872 893 872 895 0.90 22 28 0.82 75 4.8 0.0 2 23 968 991 967 991 0.94 23 28 1.7e-05 0.0015 19.6 0.1 3 23 998 1019 997 1019 0.94 24 28 0.0033 0.3 12.3 2.9 2 23 1024 1046 1023 1046 0.94 25 28 0.033 3 9.2 4.7 1 23 1051 1074 1051 1074 0.96 26 28 2e-05 0.0019 19.3 5.0 1 23 1078 1101 1078 1101 0.97 27 28 0.00024 0.022 15.9 0.3 2 23 1108 1129 1107 1129 0.96 28 28 9.7e-06 0.00089 20.3 0.5 1 23 1135 1157 1135 1157 0.98
Sequence Information
- Coding Sequence
- ATGCTGCCCGATTATTTGGAAACAGAGGTCACAAAGCACAGTGCTAGTTATCTAAGGAGGAGAAACCTACAAATATTACTCAACAATACCACGTTGATTCCTTTTAAATGGCGCGGAAAATACCTCTGCTTTTATTGTGGGGACGATACAAAGACGCCCGATCGTCTCCGGAAACATACGAAAGGCCACGGGCCTTGCAGTGATAGAGATAGAGCTATTCGATTAGTTAAATCAGCTGATATAGAAATCAAAATAGATGTTTCCGATGTCAGATGCGAGATTTGTTCGGAAACTTTCCCGTTCTTAGACGAGATCATCGACCATTTGATTATTAAACACCAATTGCCTTACGAGAAAGATGTAGAGATGCTGCTGTCAGCGTACAGACTTTTAGATCTTCAGTGTCTCCTTTGCGATAAAAGTTTCAATTATTTACGTAAATTGATCACACATATGAATACAGTTCATCCTAATAATAGCTTTGAGTGTGCCGAATGCACAAAGACTTTTAATAAAAAGCGGGATTTAGATTCGCACTTGCGATTCCATCATAAGAAATATCATTCTTGTACCAAATGCGATGAAACATTTCCAACAAACTCCGCGTTACAGATTCATAGGTCTAACGCTCACTCTTCGACGTGTAACATCTGCTTCCAAGTATTCTCGTCAGACGGCAAGAGGTTAGCTCATCTTAAATCTGACCATGACACAGATCACAGTCCATGTGGTTTCTGCAATAAAGTTTTGACAACAAAACAAGCTTTTATAAGACACGCTGCAAATTGTGAGCATACACCTAAGGAAGACACGGTCATCATTGATGACGAAGACAAAAAGATATCCGTCAAGGAAATAAGAAACAGTTTAGCGTGCATCTTTAACATGACTACAGCTCTTCCTTTCAAATTCTTTATGAACAGGCTGAGATGTTTCTATTGCACGAAAGATTTCAACTCTTGCGACGATTTAAAAGAACATACGTCGATAGATCATCCACACTGCGATATATCCTTTAAATCTATGAGACTAAGGAACAGATATGACGGTGTTCAAATCAAAGTTGATACGTCTTCTTTATCTTGTAGACTGTGCCACGTCACCTTGCAGGATCTGAACGATTTGATTGACCATCTTACCAGAGAGCATAAGGTGAAATGCGACATCTCAGTCGAGAGTAATCTACAGCCGTTCAAACTGATCAAAGACAACTATCCTTGCCCTATTTGTGGCGAAGTGTATAGATATTTTGGCGTCTTGCTCAAGCATGTTAGTGCGTCTCACAGTGGCAATAAACATATATGCATGTACTGCGGGAAAGCTTTCAGAACGGACCCTAATCTTCGAGCTCACGTGTCTAGGCGTCATAAAACAGCTGACAATCACAAGTGCGATAGCTGTGATCTGCTTTTTGGGACGAATGGTGCGTTAAGGAACCATCAAGGATCAGTCCACGGTACAAAATTAGTCCAATGCTTCGAATGTTCTGAAAAATTCGCCTCCAAGTACTCCATGCAACGACACTTGATCACATCGCACGGCACGGGGCATAGATGCACATATTGTGATAAACTTTTTACTAAAAACTCTTTTATGGTCAACCATGTAAGGAGGTCGCATTTGAAAGAAAAAAATGTAGAATGCTCTGTTTGCTTCGAGAAGTTCTTTGATAATGGTCTGCCAGGACCGTACGGAGGCTGTACCTCTGAGAGACGTCGGAAAAACTTGAAAATTCTATTCAACCATACTACCATCATGCCATTTAAATGGCGAGGCAAATACCTTTGCTTCTACTGCGGAAAAAACTATACAGAATACACTGAGTTTAGGAAGCATACAAAATCTCACGGACTATGTACTACTAAAGATTACTCCCTAAAACATATCAAAGGAAATAATGTGGAAATTAAAATCGACGTCTCAGAGATAGGCTGCGATATATGCAATGAACCCTTCAACAGATTCGAGGAAGTGATTGATCACTTGATCACGAAACACAATATGGAATACAACAAAAATATCGATATACCCTTCCAAGAATACAGACTAGTCGATTTTCGATGTCTGTACTGCGAAGAACAGTTTTCCTACTTCGGATATTTGGTTAAACATGTTAATAATGTACACCCGCAGAACTGTTTCATTTGCGATGATTGTGGTGTTACTTTCAACAAAAAGAGGGACTTGTCTATACATTTGAGGAACTATCATAGACAGGGAGGATACCCTTGCGATTTGTGCTTGAAGAACTTCGAAACCCGCCTTATGCTGCGTAGGCATCAAAACAATATGCATTTCAGGCACTGTAAGAGCTGTGGTCTGCGTTTTGCGTCTCTTTCCCTTTTACAAAAACATGTACTAGTCGATCATCCTCAAAATGAGAGCAACATGAAGTGTAGTTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCACATAAGCAAATGTAAAGTCAAAATCATTTCTCAAGTTGAACCACAAACTTCTTTCCTAAACGACGATGACATAAAACCGAAGAAAAAACAAAACATAATACAAATAAGACAGAACATACAGTGTGTACTGAACATGTCGACTGCTGTGCCTTTTAAATTCTTCTCCAAATACTCCTGCTTTTATTGCTCAAAGAAATTTGTGGAGTTCGACGAATTACGTCACCATACCGGCCTCGAACACCCTGTGTGCGATTTGAAATCTAAATGCATGAAAAAATGTAAAGGGGAAAGAACAGCCGTCAAAATTGACATATCAGGGTTAGCTTGTAAAATATGCCACCTCCCCATGCTTACCTTAGACGATTTAATCAACCATTTAGTAAGCGAACATAAAGCTAACTACGATACTACAATTTCTGGGTGTTTAGAGCCTTTCCGGGTTATAAAAGACAATATGCCATGCCCTATATGTCCGGATACTGTCTTTCGATACTTCGGTATTCTACTTCGACATATGAACTCCGAACATAGCAACAATAACCGAATATGCGACTTTTGCGGTCGAAGCTTCCGTAACGCCGCGAATCTAAACGTGCACATAACCTATGCACACACTGGTTCCTGCGAATGTGACATCTGCGGCGTTAAATATAAGAACCAATGGTGCTTGGCACGGCATAGAGCAAAGACACACGACGCGAAAGACCACAAATGTCCAAAATGTCCGGAGCTGTTCCAGTCTCAGTATCATAAACAAAAACATTTAATAAAAATGCACAATGTGGGCCATAAATGCAGTTACTGCGGTAAAATGTTCACTAGGAACTCTTTCATGAAAGACCACGTTAGAAGAACACATCTTAAGGAAAAGAACATCCCGTGTTCCATTTGCAATGAGAAATTCTTCGATAATTATCTTTTGAGAATGCATATGGTCAAGCATGAGGGCGATAGGAAATTCAGTTGTAGCGTTTGTGGAAAAGCCTTCTTGAGACGGAGTAATCTGAGCTCCCATATGGAGATGCATAAAAAGTATGGCCATGTACAGTTGCAAATATGA
- Protein Sequence
- MLPDYLETEVTKHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTKTPDRLRKHTKGHGPCSDRDRAIRLVKSADIEIKIDVSDVRCEICSETFPFLDEIIDHLIIKHQLPYEKDVEMLLSAYRLLDLQCLLCDKSFNYLRKLITHMNTVHPNNSFECAECTKTFNKKRDLDSHLRFHHKKYHSCTKCDETFPTNSALQIHRSNAHSSTCNICFQVFSSDGKRLAHLKSDHDTDHSPCGFCNKVLTTKQAFIRHAANCEHTPKEDTVIIDDEDKKISVKEIRNSLACIFNMTTALPFKFFMNRLRCFYCTKDFNSCDDLKEHTSIDHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCHVTLQDLNDLIDHLTREHKVKCDISVESNLQPFKLIKDNYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHVSRRHKTADNHKCDSCDLLFGTNGALRNHQGSVHGTKLVQCFECSEKFASKYSMQRHLITSHGTGHRCTYCDKLFTKNSFMVNHVRRSHLKEKNVECSVCFEKFFDNGLPGPYGGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKHIKGNNVEIKIDVSEIGCDICNEPFNRFEEVIDHLITKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVLVDHPQNESNMKCSYXXXXXXXXXXXXXHISKCKVKIISQVEPQTSFLNDDDIKPKKKQNIIQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTGLEHPVCDLKSKCMKKCKGERTAVKIDISGLACKICHLPMLTLDDLINHLVSEHKANYDTTISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRAKTHDAKDHKCPKCPELFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCSVCGKAFLRRSNLSSHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527571;
- 90% Identity
- -
- 80% Identity
- -