Pmet026421.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- LR990523.1:17854172-17866707[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 48 0.0011 0.1 13.8 0.1 3 23 297 317 297 317 0.98 2 48 0.00028 0.026 15.7 0.3 1 23 323 345 323 345 0.97 3 48 4.2 3.8e+02 2.6 0.2 12 23 353 364 352 364 0.87 4 48 0.00028 0.026 15.7 0.3 1 23 370 392 370 392 0.97 5 48 4.2 3.8e+02 2.6 0.2 12 23 400 411 399 411 0.87 6 48 0.00028 0.026 15.7 0.3 1 23 417 439 417 439 0.97 7 48 4.2 3.8e+02 2.6 0.2 12 23 447 458 446 458 0.87 8 48 0.00028 0.026 15.7 0.3 1 23 464 486 464 486 0.97 9 48 4.2 3.8e+02 2.6 0.2 12 23 494 505 493 505 0.87 10 48 0.00028 0.026 15.7 0.3 1 23 511 533 511 533 0.97 11 48 4.2 3.8e+02 2.6 0.2 12 23 541 552 540 552 0.87 12 48 0.00028 0.026 15.7 0.3 1 23 558 580 558 580 0.97 13 48 4.2 3.8e+02 2.6 0.2 12 23 588 599 587 599 0.87 14 48 0.00028 0.026 15.7 0.3 1 23 605 627 605 627 0.97 15 48 4.2 3.8e+02 2.6 0.2 12 23 635 646 634 646 0.87 16 48 0.00028 0.026 15.7 0.3 1 23 652 674 652 674 0.97 17 48 4.2 3.8e+02 2.6 0.2 12 23 682 693 681 693 0.87 18 48 0.00028 0.026 15.7 0.3 1 23 699 721 699 721 0.97 19 48 4.2 3.8e+02 2.6 0.2 12 23 729 740 728 740 0.87 20 48 0.00028 0.026 15.7 0.3 1 23 746 768 746 768 0.97 21 48 4.2 3.8e+02 2.6 0.2 12 23 776 787 775 787 0.87 22 48 0.00028 0.026 15.7 0.3 1 23 793 815 793 815 0.97 23 48 4.2 3.8e+02 2.6 0.2 12 23 823 834 822 834 0.87 24 48 0.00028 0.026 15.7 0.3 1 23 840 862 840 862 0.97 25 48 4.2 3.8e+02 2.6 0.2 12 23 870 881 869 881 0.87 26 48 0.00028 0.026 15.7 0.3 1 23 887 909 887 909 0.97 27 48 4.2 3.8e+02 2.6 0.2 12 23 917 928 916 928 0.87 28 48 0.00028 0.026 15.7 0.3 1 23 934 956 934 956 0.97 29 48 1.3 1.2e+02 4.1 0.7 11 23 986 998 984 998 0.92 30 48 0.00028 0.026 15.7 0.3 1 23 1004 1026 1004 1026 0.97 31 48 4.2 3.8e+02 2.6 0.2 12 23 1034 1045 1033 1045 0.87 32 48 0.00028 0.026 15.7 0.3 1 23 1051 1073 1051 1073 0.97 33 48 4.2 3.8e+02 2.6 0.2 12 23 1081 1092 1080 1092 0.87 34 48 0.00028 0.026 15.7 0.3 1 23 1098 1120 1098 1120 0.97 35 48 4.2 3.8e+02 2.6 0.2 12 23 1128 1139 1127 1139 0.87 36 48 0.00028 0.026 15.7 0.3 1 23 1145 1167 1145 1167 0.97 37 48 4.2 3.8e+02 2.6 0.2 12 23 1175 1186 1174 1186 0.87 38 48 0.00028 0.026 15.7 0.3 1 23 1192 1214 1192 1214 0.97 39 48 4.2 3.8e+02 2.6 0.2 12 23 1217 1228 1216 1228 0.87 40 48 0.00028 0.026 15.7 0.3 1 23 1234 1256 1234 1256 0.97 41 48 4.2 3.8e+02 2.6 0.2 12 23 1264 1275 1263 1275 0.87 42 48 0.00028 0.026 15.7 0.3 1 23 1281 1303 1281 1303 0.97 43 48 4.2 3.8e+02 2.6 0.2 12 23 1311 1322 1310 1322 0.87 44 48 0.00028 0.026 15.7 0.3 1 23 1328 1350 1328 1350 0.97 45 48 4.2 3.8e+02 2.6 0.2 12 23 1358 1369 1357 1369 0.87 46 48 0.00028 0.026 15.7 0.3 1 23 1375 1397 1375 1397 0.97 47 48 4.2 3.8e+02 2.6 0.2 12 23 1405 1416 1404 1416 0.87 48 48 0.00028 0.026 15.7 0.3 1 23 1422 1444 1422 1444 0.97
Sequence Information
- Coding Sequence
- ATGAGAACATATACTCGTAAGCGGCCGCACTATGAGTTAATAGAAGGTGTCCATGATCTATGTAGACTGTGTCTGAACAAGGCTGGAGAAGGCTTGCCCATATTCACTGAAGACCCACACAATATTTGTGCTACATTAGCAATGAGGATCATGATATGTGTGGGACTGGAGGTGACAAAAGAAGAATGCTTACCAAATATAATCTGTGCGAAGTGCTTGACTGAACTCGATAAATATTATTCATTTAGAAAGCAATGTGAAGTAACATATCAGAAACTTAAATCTCATGTAATAGCCTTCAAAGAAAATTTATACAAAGAAAAGCAATTGAAAGAAGCAGAACAGAAAAAGAAGTTAGAAGAAGAAACCAAAAATGGAATGAAGTTTGTAGTTACATTTGAAAAGGATCAGTTTCCTGACCTCAATGTTTTGAATCTGAATGGTGTAGCACGCATTAACAATTTTGTAGACAAATTACCTGACCTTACAACAGTAGACAGCACAGAAATAGAAGTTAAAGTGATAGATGAAACTGACCAAAAACCACATGATGGAGACACATTTACCCCAGATGTAACAGCATTCTTGTCCACCATGCTCCTAGAATTGGGAATTATAGCCCAGCAGGAAGATGGGCTGGTGTACTCCAACCAAAACATTTCGTCGTTAGAGGTGGAAACTGGGGATGGCAGTCAGGTCACGTTTGAACTGGCGGAGGAAGATGATATAGAGGAACAGGAACAGGAAGAAGTAATTGAGGACCCTCAAAATATACCCAAAGAAGGAGATGAAACATCACAAGAAAACGGAGGCTGCAACATCAAATATGCTACTTCAAACTGGTCCAACAATTTAAATAAAAAGAGCCAGCCCAGCGAGGGCGCGTGGTGCGACGCGTGCGGCAAGCGCCTCGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGCCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTATACCCCACATAGCCTCGCGCGCCGCGCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCTTTCGCCTGCAACACCTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGAGGCATCAGCTGGTGCATGAAGGTACACCCCACATAGCCTCGCGCGCCACCTGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCAACACTTGCGGCCGCCGCTTCGCGCAGAAGGAGGTCATGCTGA
- Protein Sequence
- MRTYTRKRPHYELIEGVHDLCRLCLNKAGEGLPIFTEDPHNICATLAMRIMICVGLEVTKEECLPNIICAKCLTELDKYYSFRKQCEVTYQKLKSHVIAFKENLYKEKQLKEAEQKKKLEEETKNGMKFVVTFEKDQFPDLNVLNLNGVARINNFVDKLPDLTTVDSTEIEVKVIDETDQKPHDGDTFTPDVTAFLSTMLLELGIIAQQEDGLVYSNQNISSLEVETGDGSQVTFELAEEDDIEEQEQEEVIEDPQNIPKEGDETSQENGGCNIKYATSNWSNNLNKKSQPSEGAWCDACGKRLASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRATCARTRASGPSPATPAAAASRRRSLARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGIPHIASRAALARHLRTHSGERPFACNTCGRRFAQKEVMLRHQLVHEGTPHIASRATCARTRASGPSPATLAAAASRRRRSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01193288;
- 90% Identity
- iTF_01193288;
- 80% Identity
- iTF_01193288;