Pmet017771.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- CAJHWW010000009.1:165067-165876[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.7e-09 1.6e-06 28.4 0.1 3 38 17 52 15 56 0.91
Sequence Information
- Coding Sequence
- ATGGTGCGCACGTACAAACCCAAAACTGATAGAAAAAATATCAATAAAGAAAACATTGAAGACGCAATACGTGAAGTATTGTCAAAGACTTTATCTATACGCAAAGCAGCCGACAAATATAGCATCAAAACTGCGACCCTACAACATCGCATAGAAAAAGCCAGAAAATCATTTGAAGCTACCAGAATATTATCTACAAATGAAGCATCCTCTTCATTACAAGCAGAATCTTCTTTATCACAAGCAGGTCCATCTTCACCACAAATAGCACCATCTATGGAGATGGCACAAATAGCGTCATCTTCAGCACACACTACTACTGCAGCTTTATCATCACACACTGCTACAGCTACTTCATCAAACATCTATGGTTCCAAGTATACCGTTGCACAAGTTTTTTCAATCGAACAAGAAAAGGCATTGACTCAATATTTATTAAATTGCAGTAAAATGCACTACGGCCTTACATTGAGACAGCTTTTGACTTTGGCATACGAGTTCGCAGAATCCTCAGGGTGTAATTATCCAAAACCCTGGAAAAAAAACAAATGCGCTGGAAAAGATTGGGCAGCTGGCTTCAGGAAGAGAAACCCAGAATTGAGTCTACGAAAACCAGAAAACACAAGCGCAGCAAGAAGCTTTGCTTCTAATAAAGCTGCTGTAGCTCAATTTCATGATAATTACGAACGCATAATGAGACAGTACAATTTTACACCCGATCGAATAATAAACTTAGACGAAACAGGCATAAGCACAGTTCTTTCTACTCCTAAAGTTATTGCTGGAAGAAAACAAAGACAGGTGGGATAA
- Protein Sequence
- MVRTYKPKTDRKNINKENIEDAIREVLSKTLSIRKAADKYSIKTATLQHRIEKARKSFEATRILSTNEASSSLQAESSLSQAGPSSPQIAPSMEMAQIASSSAHTTTAALSSHTATATSSNIYGSKYTVAQVFSIEQEKALTQYLLNCSKMHYGLTLRQLLTLAYEFAESSGCNYPKPWKKNKCAGKDWAAGFRKRNPELSLRKPENTSAARSFASNKAAVAQFHDNYERIMRQYNFTPDRIINLDETGISTVLSTPKVIAGRKQRQVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00783369;
- 90% Identity
- iTF_00036583; iTF_00421281; iTF_00394343; iTF_00425310; iTF_01377404; iTF_00394345; iTF_00394350; iTF_00394352; iTF_00394351; iTF_00418912; iTF_00237455; iTF_01503782; iTF_00186090; iTF_01246770; iTF_01192601; iTF_00026782; iTF_00952640;
- 80% Identity
- -