Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.3e-09 5.4e-07 29.9 0.0 5 39 1 35 1 40 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.3e-09	5.4e-07	29.9	0.0	5	39	1	35	1	40	0.92

Coding Sequence: ATGAACCTAGCCATTGAATCAGTGCGTAAAAATAAAGCAGGTTTGAACGAGGCAAGTAGGATGTATGGAGTGCCTAAAGCCACACTTAAACGAAGATTGGATGGTGTGAATCAAAAGGCTAAGGAACATGTTCAAATAGTAGGATCTGAAGGTGATCTTCCGTCAGAATTGGAAACCGAATTATGTCAACACATCCTCGAGATGGAAAGTAGTTTGTCTGGTGTAACGCCTTTCGATATTCGGCAGCTGGCATTTGAACTGGCAGAAAAGAGCAATATCAAAAATCGATTTAACAAAGAGTTGCAGAATCTAGAAGTGACGGAGCCAATTACATGTCAAAATGAAGCTATGACTGCTGAATCTCAGATTGAAACCTTAGCAGTATCACAGAATATTGATTTTAGTACAGCTGAATCAAAGGCACGCAATTTCGAATTCACAATAAACCAAATATCTCCTGGAGCTAAAAAAGTAGCACAAGAGTTAAGACAAAGGAGTAAAAAAGCACAAAGTAGCTTGGAACTGACGTCGACGCCTTATAAAACCACTTTAGAACAAGCTATTGTAAGGCCTTCAAAACCGAAAAAGCCGAAATTTACTGCAAAAGAAACTGCATTTTCTAAAAATAAAATAACTGATGAGCCAGAGCCATCAACAAGCAAAGATGCCAAATCAGTAAATATCGAAAAATGGTTTTGCAAAATCTGCCTACTGTGTGCAGTTGAAGACATGATTCAATGTATGATGTGTAAAGCCTGGGTTCATGTAGATTGTGCCTGCGTTAAGAAAACTATTAAGAAGTATTTATGTCCTCAATGCAAATAA
Protein Sequence: MNLAIESVRKNKAGLNEASRMYGVPKATLKRRLDGVNQKAKEHVQIVGSEGDLPSELETELCQHILEMESSLSGVTPFDIRQLAFELAEKSNIKNRFNKELQNLEVTEPITCQNEAMTAESQIETLAVSQNIDFSTAESKARNFEFTINQISPGAKKVAQELRQRSKKAQSSLELTSTPYKTTLEQAIVRPSKPKKPKFTAKETAFSKNKITDEPEPSTSKDAKSVNIEKWFCKICLLCAVEDMIQCMMCKAWVHVDCACVKKTIKKYLCPQCK

Sequence clustering based on sequence similarity using MMseqs2