Pmet025412.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- LR990529.1:11192292-11194487[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8e-10 1.9e-07 31.4 0.1 1 41 16 57 16 59 0.92 2 2 1.3 3.1e+02 1.9 0.0 18 30 65 77 61 78 0.87
Sequence Information
- Coding Sequence
- ATGGTGCGGACTTATAAACCAAAAAGAACAAGTACCCAAGCTGTGGATGAAGAATCCATGCAGTCAGCAATACAGGATGTTATGCAAGGAGTATTGTCATATAGGAAAGCTGCGGCCAAGTATAATTTGAAATTGTCAACATTAGAAAGCCGTGTAAAAAAATACAAGAATAGCAATGATGCTGAAGGGTCAAGCAACCGCAAAGCATTGACAATTTACAATATTCCAAAGCTTGTGAAAATTGCATTTTTCGAATCATTCACCGCAAAAAATATCACAAGCGGGTTTAACAAACCCGGAATATGGCCTCTTAATGAATTAGCCTTTAGTGACGAAGATTTTGCTCCAACTGAAGTGTATAGATCCGGTAACTTAGAAAATGTGCCTCCTACTCAAAACATCGTTGAAGATTTGTCAGCACCTACTCCGCAGCCAAGTGTCTCTAATATCTGCCAACCCGCTACTTCTGGAACACAGGATTTCATGGAGATTCCGCGAGAATCTACAGAACAAACTATTAACTCACCATTGATAACTTATGATGATAAACTACAAAGGTGTAATTTAGATGCTTGTGAACCAGATACTTTGAATAATTCACCAATCCATCAAATAGTAGCTCCTTTGAAGACAGTTTTGACACCAGAAGCAATTCGACCCTATCCGACTGCTGTAAGAAGTAATAAAACAAACAAAGGACGACGGCCAGGAAAATCACGTATTTATACTGACACACCCGAAAAAACGCTAATTGAAGAGAGACACAATGAAAAACAATTGAAAAAGCTAGAACAGGAAAGAAGGGCTAGGGCAAGACAAATGAAACGTAGTTTAGTTGATTTTAATTTAAAAACGAAGAACAAGAAAGCTAAACACACAGAAAGTGATGAATCTGATTGTGATGGATCTGATATAAGCTTTCAAGAGAGTTCAAGTTCTATCACAGATGAAGATGAAACTGAGCATGAAAATTTTGAAATGAACAGAAGTCAATTAACAGTTGATGTAATTCCAGCAAATATTAAAGACGGTTCATTTATTTTAGTGAAGTTCCCTAAGAAAAAAAGTATTATTTACTATGTAGGAAAAGTTGTCGGTCACTATAGTCAGACTGAATTTAAAGTATCTTATCTAAGAAAGAAGCCAGGGTTTTCGTGGACATTTGTTTTCCCTAATGTTGAAGATATTCATACTGTTTATATAACTGATGTTGAAATGATTCTTCCTGAACCTAAGCCTCCAACAGTTTGTACTTCTAGAACATCAAAACTTTTCACTTTTTCAGTAAATTTTTCAAATTTTACTGTTCAATAG
- Protein Sequence
- MVRTYKPKRTSTQAVDEESMQSAIQDVMQGVLSYRKAAAKYNLKLSTLESRVKKYKNSNDAEGSSNRKALTIYNIPKLVKIAFFESFTAKNITSGFNKPGIWPLNELAFSDEDFAPTEVYRSGNLENVPPTQNIVEDLSAPTPQPSVSNICQPATSGTQDFMEIPRESTEQTINSPLITYDDKLQRCNLDACEPDTLNNSPIHQIVAPLKTVLTPEAIRPYPTAVRSNKTNKGRRPGKSRIYTDTPEKTLIEERHNEKQLKKLEQERRARARQMKRSLVDFNLKTKNKKAKHTESDESDCDGSDISFQESSSSITDEDETEHENFEMNRSQLTVDVIPANIKDGSFILVKFPKKKSIIYYVGKVVGHYSQTEFKVSYLRKKPGFSWTFVFPNVEDIHTVYITDVEMILPEPKPPTVCTSRTSKLFTFSVNFSNFTVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192585;
- 90% Identity
- iTF_01192585;
- 80% Identity
- iTF_01192585;