Pmet016305.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- LR990517.1:25000177-25000647[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-11 8.9e-09 35.6 0.0 2 43 11 53 10 55 0.85
Sequence Information
- Coding Sequence
- ATGACAAAGGCGCCAAAATTAAAATATTCTCAAGAAAACCTTCAGAAGGCAATAGCTGAAGTTCAAAATAATGAACAGCAACTGTCTGATCGCCAAATTTCTCAAAAGTACGGTATCCCGAGGTCAACACTTCGGTTTTACAAACGTAACCCGGGCCATAAAACCAGTCTGGGCCCATCGCCAATTCTGACTACAAGCGAAGAATCGCTTATTGAAGATTGGTTAATTACATCTGCTCGAAAAGGTTTTCCCAAAAACAAAGACAATGTGTTGGACAGCGTACAAAAATTCTTAATTGATAACCCAAGACCAAATCCTTTTACTAATAACAGACCTGGCGTCGGATGGTGGAAGGCTTTTTTAAAGAGACACCCAAGGTTAAGCATCAGAACTTCGGAAGGAGTCACAAAAGCCAGTTCATGTGTTTCCGAAAAAGACATAAGGGGATGGTTTGGTGAAATACGTTCATAA
- Protein Sequence
- MTKAPKLKYSQENLQKAIAEVQNNEQQLSDRQISQKYGIPRSTLRFYKRNPGHKTSLGPSPILTTSEESLIEDWLITSARKGFPKNKDNVLDSVQKFLIDNPRPNPFTNNRPGVGWWKAFLKRHPRLSIRTSEGVTKASSCVSEKDIRGWFGEIRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192588; iTF_00038639; iTF_01527056; iTF_00831125; iTF_01192581; iTF_00063512;
- 90% Identity
- iTF_01192581;
- 80% Identity
- iTF_01192581;