Pmet008127.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- LR990539.1:5292306-5292914[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-11 7.6e-09 35.9 0.0 1 37 16 53 16 60 0.89
Sequence Information
- Coding Sequence
- ATGCCGCGAAAGTATGTGAAAAAGGGGACGAGAACGGGACAAGTAGACGAAGATAGCATGAAATCTGCGATAGACGAAGTTTTGAATAAAACCTTATCTATCAGAAAGGCTGCGCAAAAATATGGCGTCAAACCAACTACGCTCGAAAGTCGCTTGACGAAGTTACATAAACAAGCAGCTACTGAAGACAGACATAGTAAGGTACGTTCCAAATACTCTTCAAACCAAGTGTTTTCTGCAGAAGAAGAGGCTCATTTAAATACGTACATAATGAAATGCTCCAAAATGCACTACGGATTGACGATTGTCCAAGTAAGAAAACTTGCGTACGAGTTTGCAAAAGCTAATAGATTACGTTATCCTTCTAATTGGGATCACAATCAAATGGCAGGAAAGGATTGGGTGGAGAGTTTTCGCAAGCGTTGCACAAATTTAAGCCTGTGCTTCGCATTCAATAAGACTGCCATAAAAGATTTCTTCGAAAACCTTGGGACTGTATACGTAAAATCGTCGTCTTGGAGGGCAATGGAGCTATGCCACAATTTTGGCGAAATGGAGTTAAGTGCATCAACGTGTTATGAAAGAGCCAAAGTTTATATAGGTCAATAA
- Protein Sequence
- MPRKYVKKGTRTGQVDEDSMKSAIDEVLNKTLSIRKAAQKYGVKPTTLESRLTKLHKQAATEDRHSKVRSKYSSNQVFSAEEEAHLNTYIMKCSKMHYGLTIVQVRKLAYEFAKANRLRYPSNWDHNQMAGKDWVESFRKRCTNLSLCFAFNKTAIKDFFENLGTVYVKSSSWRAMELCHNFGEMELSASTCYERAKVYIGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192580; iTF_01025983; iTF_01094829; iTF_01025975;
- 90% Identity
- iTF_01094829;
- 80% Identity
- -