Pmet006837.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- LR990528.1:14707523-14711731[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-12 4.8e-10 39.7 0.1 1 45 23 67 23 67 0.95 2 2 2.9e-07 7e-05 23.2 0.0 1 42 103 144 103 147 0.94
Sequence Information
- Coding Sequence
- ATGAATGCTGTGGTGTCCTGTTTTATAAAATTGAAGTCGGCTCGTGCAAAACGGTATGCTATGTGGACGGAAGAAGACTTACATGCTGCTATGGCAGCCGTTACAGAAGGGAACGTGTCGCAGAAAGCTGCCGCAGAACGTCACGGAATACCTAGAAACACTCTCAGAAACCATTTGAGATCGGGAAACTTTGAAAAACGTATGGGACGAGGTACAGTTATGAGCGAAGTACAAGAAAAAAAACTGCTGAATCGCATAAAAATACTTTCTAACAGTGGTCTTAAGATTCCAAAACTGCCTTTGTGGACAGAAGAAGACTTACGTGCTGCCATGGCAGCTGTGAAATGGGGAAAAATGACAAAGAAAGTGGCGTCAAATCATTATGGAATTTCTATACCGGCTCTCAGCTATCATTTGAGAACGGGATCCTCAGTTCTATTAAATTGGGTTGGAAGTATACAAGACGTGCTATGTGGACAGAAGAAGATTTACGTGCAGCTATGGCAGCTGTTACAGAAGGAAACGTGCCAGAAACAACTGCCGCATTCCGTCATGGGATCCCTAGGAACACCCTCAGAGACCACTTGA
- Protein Sequence
- MNAVVSCFIKLKSARAKRYAMWTEEDLHAAMAAVTEGNVSQKAAAERHGIPRNTLRNHLRSGNFEKRMGRGTVMSEVQEKKLLNRIKILSNSGLKIPKLPLWTEEDLRAAMAAVKWGKMTKKVASNHYGISIPALSYHLRTGSSVLLNWVGSIQDVLCGQKKIYVQLWQLLQKETCQKQLPHSVMGSLGTPSETT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -