Basic Information

Gene Symbol
nfxl1
Assembly
GCA_000262795.1
Location
Scaffold2791:11866-14204[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.73 4e+03 -2.7 2.0 14 19 149 154 149 154 0.86
2 18 0.072 4e+02 0.5 0.4 4 10 185 191 184 191 0.96
3 18 2.5e-08 0.00014 21.2 17.0 1 19 199 216 199 216 0.99
4 18 0.52 2.9e+03 -2.3 2.1 5 10 241 246 241 246 0.93
5 18 5e-06 0.028 13.8 12.0 1 19 252 271 252 271 0.95
6 18 0.53 2.9e+03 -2.3 0.2 4 7 276 279 275 279 0.88
7 18 2e-06 0.011 15.1 16.7 1 19 306 325 306 325 0.98
8 18 2e-06 0.011 15.1 11.7 1 19 360 378 360 378 0.99
9 18 0.019 1e+02 2.4 1.8 1 12 387 398 387 398 0.95
10 18 2 1.1e+04 -4.7 2.3 5 10 401 406 401 406 0.91
11 18 1.1e-05 0.059 12.7 14.8 1 18 412 429 412 430 0.95
12 18 1.5e-07 0.00081 18.7 15.9 1 18 439 456 439 457 0.97
13 18 2 1.1e+04 -4.8 1.0 9 11 495 497 494 499 0.78
14 18 0.084 4.6e+02 0.3 6.5 10 19 504 513 501 513 0.92
15 18 0.015 80 2.7 5.6 4 12 527 535 525 535 0.86
16 18 1.4 7.8e+03 -3.6 0.4 9 12 587 590 587 590 0.76
17 18 1.3e-05 0.072 12.4 8.4 1 12 606 617 606 617 0.97
18 18 0.00092 5 6.6 13.8 1 19 645 662 645 662 0.93

Sequence Information

Coding Sequence
ATGTCCAAGAAGTCTACAGGTGTAAAAAATGCCTGGGGTGTGGTAAAAACAGCACAACATGGAGTGGAAACAGCCAAAAAACTGGCTGAAACTTATGAATCTAGCTCAGATGAGGAAGATGTATCTACAACGGAGATTTTTGAGTCTGTCCTCAAGGGATACAGCGGCGATAGTGGTGACCTGAGGAGAACCCATCAATTTTTGGAGAATGCTTTTCAATCGGGAGCTGCAACATGTCTCATCTGCATTGGTGGCATTAAAAGGGTCGATTCTATATGGTCTTGTGTGACATGTTACTGCTTCTTCCACTTGGCATGCATTCAACGCTGGGCAAATGACAATATTGGCCAGAAACGTCTACGTCAGGCCGATGAGGCATCTTCTCCGGGATTCTATACAAATCGCGGTGAGTTTGTTCCCAGGAAAATTACTCCCATTACGTGGGATTGTCCACAGTGTAGGCACTCGTACGGTCCGGAAGAGGTTCCCAGGAGATATTTGTGTTTTTGTGGGAAGGAAGACAATCCACAAGTTCATCCGTGGTTGATACCACATTCGTGCGGGGAATTGTGTCAGCGTCTGTTGGAGCCAGTTTGTGGTCACAAGTGTCTGCTATTGTGTCATCCAGGACCCTGTCCACCTTGTCCTCAGACAATTTCGCAGAGTTGTGAATGTAGGAAGTCGGCTAAGCGAACAATTCGGTGTTCCACAAAAAGTTGGCGGTGTCAGGAAAAATGTCAGAAGATCCTCTCTTGTGGCGTTCACAAATGCAATCAGATTTGTCATTCGCCGGATTCCTGTAAGCCCTGCTCTCGACGAAGTGTCCATCGATGCCAGTGTGGTCAGAAACAGGAAGAGAGGAATTGTTCAGAGAGTGTTTGGCAATGTGCCACAGTGTGCGGCAAGGAGTATTCCTGTGGCCGTCATCGGTGTGAGAAACGCTGTCATCCTCCGGGAGAATGTGGAGATTGTCCACAGGGTCTACCACGGTCTTGTCCATGTGGCAAACAGACTTCCGTAGCTCCTTGTTCTGAGCAGATTGACACTTGTGGTGATTCCTGCCTCAAGCAACTTCCCTGTGGGGACCACGTGTGCCTGGACAGGTGTCACAGAGGAGAATGCGGTGCATGTCCGGAGATTGTAGAAAAACGCTGTCGCTGTGGACTACACAGTAAACAATTGCCCTGCCATAAAAGTTTCACGTGTGAGACCAAGTGCAAGCAACAAAAGGATTGCACGAAGCACGTATGCAATCGCAAATGCTGCGACGGGAATTGTCCTCCGTGTGACAAGATTTGCGGCAAGACTCTGCCCTGTGGACGACACAAGTGCAAGAGTAATTGTCACACTGGCCACTGCTACCCGTGCAATCTGAAAGCCAAGGTTAAGTGTCGCTGCTCAAAGACCGTCATTGAAGTCCCATGTGGACGTGAACGCAAAACTCGTCCACCAAAGTGTCATTTGCCTTGTCGACGACCCTCCAAGTGTCACCATGAGAATCCCCATAATTGCCATCAGGATGACTGTCCGACGTGCACGAAAAAATGCGCCCTCTTCAATGACACCACCAAATGTGCTCATCCATGCGAAGCCAAGTGTCATGATGCTGTTCTGGTGCGGTACGTGGACAAGAACTGGCGTCCAGCTGGTCCATGGGATGTCCAACCTGAAGTGACAGAAATCACACGACTGCCCCATCCCAAATGCGAAATTCGTGTCCCAGTGTCTTGTCTTGGTGGTCACGAGACCATTCCCTGGCCCTGCCACGATGCCATTCCACGGAGCTGTGGCCGGTCTTGTGGGCGGCAATTGAAATGTGGAAATCATAAGTGCGAAAAGGAGTGTCACTCTGTCAAGGATTTGCAGTTGTGGCTGCAGCAGGAGGCATGTGATGAATGCCGCGAAGGATGCAAGAGGAAGAGACCACAGGGATGTTCTCATCCGTGCAAGAAACCCTGCCACTTCGATCCCTGTGATCCTTGCACAGTGGCAACCAAGACAGCTTGCCACTGTGGACTCACTCAAGTGATATACAGATGTGGAGAATTCTTCGCTTCGGACGATCCCAATGCCAAGGAGACTCAGTTGAGTTGTGGCAATCGCTGTATCAAGAATGTAAGTACCTGA
Protein Sequence
MSKKSTGVKNAWGVVKTAQHGVETAKKLAETYESSSDEEDVSTTEIFESVLKGYSGDSGDLRRTHQFLENAFQSGAATCLICIGGIKRVDSIWSCVTCYCFFHLACIQRWANDNIGQKRLRQADEASSPGFYTNRGEFVPRKITPITWDCPQCRHSYGPEEVPRRYLCFCGKEDNPQVHPWLIPHSCGELCQRLLEPVCGHKCLLLCHPGPCPPCPQTISQSCECRKSAKRTIRCSTKSWRCQEKCQKILSCGVHKCNQICHSPDSCKPCSRRSVHRCQCGQKQEERNCSESVWQCATVCGKEYSCGRHRCEKRCHPPGECGDCPQGLPRSCPCGKQTSVAPCSEQIDTCGDSCLKQLPCGDHVCLDRCHRGECGACPEIVEKRCRCGLHSKQLPCHKSFTCETKCKQQKDCTKHVCNRKCCDGNCPPCDKICGKTLPCGRHKCKSNCHTGHCYPCNLKAKVKCRCSKTVIEVPCGRERKTRPPKCHLPCRRPSKCHHENPHNCHQDDCPTCTKKCALFNDTTKCAHPCEAKCHDAVLVRYVDKNWRPAGPWDVQPEVTEITRLPHPKCEIRVPVSCLGGHETIPWPCHDAIPRSCGRSCGRQLKCGNHKCEKECHSVKDLQLWLQQEACDECREGCKRKRPQGCSHPCKKPCHFDPCDPCTVATKTACHCGLTQVIYRCGEFFASDDPNAKETQLSCGNRCIKNVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01191684;
90% Identity
-
80% Identity
-