Ppap009581.1
Basic Information
- Insect
- Phlebotomus papatasi
- Gene Symbol
- ZIPIC_1
- Assembly
- GCA_000262795.1
- Location
- Scaffold14:722756-726944[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.6e-05 0.0014 18.3 2.9 1 23 162 184 162 184 0.98 2 13 0.022 0.87 9.5 3.8 1 23 190 213 190 213 0.94 3 13 0.00022 0.0085 15.8 0.5 1 23 219 242 219 242 0.97 4 13 0.0046 0.18 11.7 2.0 1 23 248 270 248 270 0.99 5 13 0.00011 0.0045 16.7 1.1 2 23 275 296 275 296 0.98 6 13 0.00065 0.025 14.3 2.4 1 23 302 325 302 325 0.98 7 13 0.24 9.2 6.3 2.7 2 23 535 556 534 556 0.94 8 13 0.00021 0.0082 15.9 5.1 1 23 569 591 569 591 0.97 9 13 0.0021 0.083 12.7 0.8 1 23 597 620 597 620 0.95 10 13 5.6e-05 0.0022 17.7 5.8 2 23 627 649 626 649 0.96 11 13 4e-08 1.6e-06 27.6 1.1 1 23 655 677 655 677 0.98 12 13 0.0014 0.054 13.3 3.0 2 23 682 703 681 703 0.98 13 13 0.011 0.43 10.5 2.6 1 23 709 732 709 732 0.97
Sequence Information
- Coding Sequence
- ATGATTCCGTTCTTTAATATCTATTTTGAACTGATTGGTATCACGTTGAAAGAATATCCAACATTCCCAGCGAAAATTTGTCCATCTTGCGAGTATGAAATGGTACAAGCATACAAGTTCCGGGAAAGATGTCTGGAGACTGAAGAGAAACTTAAAGATATGTTAGATGAAGAGAACTCAGTAAGGGATGAGAATTTTGAATGTATTGTCCCAGTTAAATGTGCCCAAACCGAAAAGTACAAGTCACGGGAAACATCTGCAGCTCAAGTCAAAACGAATGAACAAAATCCAAATAAATCAAAGAACAATATCAAAAAGTATTCGCCAGAGCTGTTGGAGGAGCTCAAAGATAAGAATATTAAATGCAAGCGCTGCATGAATACCTATTTAGGACTAGATTTATTCAAAGTCCACAAATGTCCTAAGACAAGTACCCCTGAAACGCATCAGAAACAACCAAAAAAGAAAGCTAGGCGGAAAATATTTCAATGTAAGGACTGTTCCAAGTTCTTCCGATCTCGAACTGGATACAATATTCATATGGACAAACATAAAAACAATAAGAGATATGAATGTCTACACTGCGGTAAAGGATTTTTCCATTGGATGGCCAGAAGGACACATACCTATAAAGTTCATCTCAATAAGACCGTTTATGAATGTGCTGATTGCGGTGAAGGGTTCTATCTGAAACATAAACTATCCAAGCATATTGCAAGGGTTCATTTAAAGTCCCACTACTTCCAGTGCGAGGTGTGCGGGAAGAAAATGAGTGGAAATTCAAGTAAGCATAGCCATATGCTGACCCACACTGAAAAAGGCACTTGCGAAATCTGTGGAAAGGAATTGAAAAACATGAATACTCTCAAGCAACATCTCAAAACGCATAGCGGTGAAAAGAATTATGAGTGCACTGTATGTGGAGGTTCTTTTACATGCAATTTCTCACTGAAAAATCACATTCGGAAGCTGCATCCGAACCAAACACACATTATACCACCGGATGGGACCATTGTCAATATCATGGATGATTGGAGCGTTTGTCGATTGTGCCTTCAGTCAAAGGAAGAATTCATGAAATCCTTTCATGATGTTAATTACAACATGATACCCTTCTTCAACATCTATTTTGAACTGGTGGGAACTACATTAACGGAGTATGCCACGTTCCCAGGGAAGATTTGTCAATGCTGCGAAGAAGAATTGATACAGGCTTACAAGTTCCGGGAAAAGTGTTTGGAGACTGAGGATAGATTGAAAGACCTAACGAATGACGATGGATTTGGATTTGGAGGGTCAAACATTGAATTTATTACGCCAACGAAAACTGAGGAAACAGAATTTCCAGACAAGAAGCCTGAAAATCCTGAAGAATTACTTCAGGACAATTTTAATGCCACTTCACAGAGTTCACTTGTTGAGAGTCAGCCTTGCGAAATTCCGGACGTGAAATCTGAAGAGGATACCAATCTCTATGACGAAGACACAGCAACTGATGATATTCAGACAGATTCTTCGAAAGAGAGATCATCATCAGGCCAAAAGAGAATTGTTCATAAATTCTCACGAAGGCAAATGAAGATGTTGGAATTGAAAAATATCCAATGTAGAAGATGCAATCAAGTATTCAAGGGTATTGAGATGTTTAAGAAGCATGGATGCAATCATGTGAGGACCAAGGAGGAGGAGCAGCAGAAGAAACTTCATGTTTGCGATGAATGTGGAAGGAGTTATACATCCCGAACTTGCTTCAATCAACATATGGATAAGCACAAGAACAACAAACGCTATGTCTGCAATTACTGCGATAAGAAATTCTTTGGATGGATCGCAAGGCGAACTCATATCTATAAAGTACATCTAAAGAAGACTTACTGTGAGTGTTCTCACTGTGGCAAAGGTTTTTACATGCGACATGAGTTGACTAAACATATACGTTCTGTTCATATGGAGGGATTTTCGTATCAGTGTGAAGTTTGTGGTAAGACATTTAAACGAAAGGACCAATTGAAGGATCATGAAAAAATCCATGAGGGTAAAAAGACATGCAAAATATGCTCAAAGGAATTAAATAGCATTGCATGTCTTCGTCAACATATGAGAACGCATAGCAATGAGAAGAACTACATTTGTCCTGTCTGTTCAAAAGGATTCACATGCAATTTCTCAATGAAAACTCATGTCAGAAAACTACATCCGGATGATGTGCACCTTCTTCCGCCAGATGGCACA
- Protein Sequence
- MIPFFNIYFELIGITLKEYPTFPAKICPSCEYEMVQAYKFRERCLETEEKLKDMLDEENSVRDENFECIVPVKCAQTEKYKSRETSAAQVKTNEQNPNKSKNNIKKYSPELLEELKDKNIKCKRCMNTYLGLDLFKVHKCPKTSTPETHQKQPKKKARRKIFQCKDCSKFFRSRTGYNIHMDKHKNNKRYECLHCGKGFFHWMARRTHTYKVHLNKTVYECADCGEGFYLKHKLSKHIARVHLKSHYFQCEVCGKKMSGNSSKHSHMLTHTEKGTCEICGKELKNMNTLKQHLKTHSGEKNYECTVCGGSFTCNFSLKNHIRKLHPNQTHIIPPDGTIVNIMDDWSVCRLCLQSKEEFMKSFHDVNYNMIPFFNIYFELVGTTLTEYATFPGKICQCCEEELIQAYKFREKCLETEDRLKDLTNDDGFGFGGSNIEFITPTKTEETEFPDKKPENPEELLQDNFNATSQSSLVESQPCEIPDVKSEEDTNLYDEDTATDDIQTDSSKERSSSGQKRIVHKFSRRQMKMLELKNIQCRRCNQVFKGIEMFKKHGCNHVRTKEEEQQKKLHVCDECGRSYTSRTCFNQHMDKHKNNKRYVCNYCDKKFFGWIARRTHIYKVHLKKTYCECSHCGKGFYMRHELTKHIRSVHMEGFSYQCEVCGKTFKRKDQLKDHEKIHEGKKTCKICSKELNSIACLRQHMRTHSNEKNYICPVCSKGFTCNFSMKTHVRKLHPDDVHLLPPDGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -