Ppap000156.1
Basic Information
- Insect
- Phlebotomus papatasi
- Gene Symbol
- -
- Assembly
- GCA_000262795.1
- Location
- Scaffold62:378317-384865[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.11 4.1 7.4 0.9 3 19 40 56 39 59 0.79 2 18 0.00063 0.024 14.4 1.3 1 23 68 90 68 90 0.98 3 18 0.13 5.1 7.1 0.3 1 23 96 119 96 119 0.91 4 18 0.016 0.61 10.0 0.0 1 23 122 145 122 145 0.93 5 18 0.00022 0.0086 15.8 0.1 2 19 154 171 153 174 0.94 6 18 0.00058 0.023 14.5 1.3 1 23 182 204 182 204 0.97 7 18 0.06 2.3 8.2 2.1 3 23 212 232 210 232 0.95 8 18 2.3e-05 0.00091 18.9 0.4 1 23 238 260 238 260 0.94 9 18 0.033 1.3 9.0 0.7 1 22 266 287 266 287 0.95 10 18 0.016 0.64 9.9 6.4 1 23 529 552 529 552 0.97 11 18 0.0012 0.048 13.5 1.7 1 23 578 600 578 600 0.96 12 18 6.4 2.5e+02 1.8 0.7 2 21 609 628 608 631 0.79 13 18 0.00021 0.008 15.9 4.1 2 23 636 658 635 658 0.95 14 18 0.00086 0.034 14.0 0.6 3 21 670 688 668 689 0.91 15 18 0.00041 0.016 15.0 2.8 1 23 697 719 697 719 0.98 16 18 1.1e-06 4.1e-05 23.1 0.3 3 23 727 747 726 747 0.98 17 18 5.9e-05 0.0023 17.6 1.5 1 23 753 775 753 775 0.97 18 18 0.00075 0.029 14.2 1.7 1 23 781 803 781 803 0.97
Sequence Information
- Coding Sequence
- ATGTCCAGGAGAAAGACTCAGCACGAAACTCTGATAGATCATGATGAATCTAGTCAGATTTGTGAGGAGTATCAGGAAGATGCTCAATCGGACGATGTACTGGACATTAAGAAGAATTGCCACTATTGTGGGAAAGAATTCGGCACAGCCAAGAGGCGATTTTTGCATGAGAGATACTGCAAAGCAGGGGATATCGAGAGATTCTCTTGCAAGGTCTGCGACTTGAACTTCAAGTTCCAGCTTGGTCTGGAGCGCCATGAAAAGCGTCATGAGCCTCCTGGTGGCTTCCTGTGTGGAGTGTGTAATGAAAAATTTACCACAGATGCCGATCGGGTTCAGCATCGGAATCAAGAGCACAAAGTCTATCGTTGTCAGATCTGTGAGGCAAAATTCGGCACTGAGGCGGAATATGTGGCTCATATTGTGAATCAGCATGGAGGGAAGGATCGAGAACCCGTGGTATGTTCAGACTGTGGTCAGCAATTCAGGAGTTCCACGCAATTGAAGGCTCACAATGAGTCCAAGTGCGGCACGATAAAAATGTACTCCTGCAATGAATGCAACAGTCGATTTATGACCTCGACCACCCTCAAGGCTCACAAATTGATCCATCTCGGGGTCAAGAAGCACCTTTGCAACTTTTGCGGATCAAATTTCCTGAGCAAAGGACAGCTCAAAGTGCACGAAAGGAGTCACACGGGAGAGAAACCCTTCAAATGCAATGAATGTGGAAAGGCTTTTGCATACCGGGAAAGTTTAGTCACTCATTCATCCCTCCACACGGGCATCCGACCCTACGTGTGCGAACTCTGCGGTTCCAAATTCTCTTGCATCGGCAATCTCATCAAACATCGTCGTTCCCGGCCCGATACTTGCGGCCTACCGCAATTCCGGCGAAATTCCAAAGTGACTCCTCGCATGAAAACAAAAAAGCTCCGCGGCAACCTAACCTCAAAACTCGAAAAGCTCGTTGAACGCAATGAAATTTCAATTGTGCACCAACTCCAACTCGTAGACACCAACGAAGAAATGCCTTCGGTAAAGAAAGAAAAAGATGAAGTGGAGATTTTCAATATTGGAGCTCCCCATGGTACCGTTGCTCCAAAACTAGAAGATTTCGCCGACACAAAGCCCCAGGTGACTGAGGTTCTCATTCACAATGCTCAAGAAGCTGAAGATCTCGATGACGATCTGCCCCTCTCCACCCTGAGATCCCAAGTAGTCACGAAAAAAGAACAAAAATTCATCCTCACCGAAGTGGAAATAGTTCCAAAAGTGACAAAAGAAGTGCCCAAGAGAAAAGCAAAGGAACCTAAAGCACCACcaaaagaggtcaaagagcgcaaagttgaaaaaaagcccccaaaaacccccatcaaaaagTCAGAATCCGACGAATCCAATGACATAGACTTCTTCGATATGAATGACCTGTCCAAGGAGTCGGATGACGATGAAACGTATCAGCCGGATCCGGTAAAATCCgaagaagatgaagatgaagatgatgaagatgaagaggaagaagttgagatTGTGCGGAAGCCAAAAGTGAGAAATGAGAGGGTTTCAATGGTCCATGAGTACAAATGTGACCATTGCCCAAAGATGTTCTGCTACAAAACCATTTTCAATCTTCATCTCAAGAGGGAACACAATATGGACATTAAGGATGAGGATTTGCCCAATCAGCAGCGTTACAGTAAGATACTCTTCCCCAGAGACCGGGTGCATGAGTGTCAGTACTGTAAGAGGAAGTATGCAAACAAGCCGGCACTCCTTAAGCATGAACAGCTCCATGGTCCCGAGGGGAAGCTTCACGTGAAATGTCGCGTGTGCAAGGAATATTTTGAGAATAATGAGAAAGAGAAGGAACATCGTCTGGCGAAGCATAAAGAGGAAATCACGTGCAAAGTGTGCCAAAAAGTCTATCGAGATGAGAGTCATCTTCAAGTTCACTTCCGCAATTGTCATACAAAGGAGCCAATTAAGAAGCTCCAGCATCTCTGTGGGAAATGCGGCAAGAGTTTCACATCTAAAACTGCCATGTTGGACCATGAGAGATCAGACTGTGGGAAATCACCGATATATCAGTGTGATGTCTGCAAGAAATTTTACCACAGTGCAGGATCGCTGAAGACTCATAAGAATGTACACACCAATGAGTTGCCTAATCTCTGTAAATACTGTGGCAAGGGATTTAGAACTCCGGGGCAACTAAAGGTTCACGAGCGCATCCACACGGGGGAGAAACCCTTCAAATGCACATACTGTCCAAAGGCTTTTGGGCACCGGGAGAGCCTGTTGACGCACGTGTCCTTACACACGGGATTCAAGAGATTCATGTGCTCAGGCTGTGGCCAGAGATTCACATGCATCTCCAATTTGCAGGCTCATCGAAAAGCTCATGCGGACACTTGTGGTCTGGTTCCCAATTGTACAAAGGCTGTAGGTCCAATGGATATTGCTAATCCGCTCAAGTCTGAGAGGCAGGACATGGATCAGGCATAG
- Protein Sequence
- MSRRKTQHETLIDHDESSQICEEYQEDAQSDDVLDIKKNCHYCGKEFGTAKRRFLHERYCKAGDIERFSCKVCDLNFKFQLGLERHEKRHEPPGGFLCGVCNEKFTTDADRVQHRNQEHKVYRCQICEAKFGTEAEYVAHIVNQHGGKDREPVVCSDCGQQFRSSTQLKAHNESKCGTIKMYSCNECNSRFMTSTTLKAHKLIHLGVKKHLCNFCGSNFLSKGQLKVHERSHTGEKPFKCNECGKAFAYRESLVTHSSLHTGIRPYVCELCGSKFSCIGNLIKHRRSRPDTCGLPQFRRNSKVTPRMKTKKLRGNLTSKLEKLVERNEISIVHQLQLVDTNEEMPSVKKEKDEVEIFNIGAPHGTVAPKLEDFADTKPQVTEVLIHNAQEAEDLDDDLPLSTLRSQVVTKKEQKFILTEVEIVPKVTKEVPKRKAKEPKAPPKEVKERKVEKKPPKTPIKKSESDESNDIDFFDMNDLSKESDDDETYQPDPVKSEEDEDEDDEDEEEEVEIVRKPKVRNERVSMVHEYKCDHCPKMFCYKTIFNLHLKREHNMDIKDEDLPNQQRYSKILFPRDRVHECQYCKRKYANKPALLKHEQLHGPEGKLHVKCRVCKEYFENNEKEKEHRLAKHKEEITCKVCQKVYRDESHLQVHFRNCHTKEPIKKLQHLCGKCGKSFTSKTAMLDHERSDCGKSPIYQCDVCKKFYHSAGSLKTHKNVHTNELPNLCKYCGKGFRTPGQLKVHERIHTGEKPFKCTYCPKAFGHRESLLTHVSLHTGFKRFMCSGCGQRFTCISNLQAHRKAHADTCGLVPNCTKAVGPMDIANPLKSERQDMDQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -