Ppap007782.1
Basic Information
- Insect
- Phlebotomus papatasi
- Gene Symbol
- ZNF236_2
- Assembly
- GCA_000262795.1
- Location
- Scaffold1949:8077-10750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6.2e-05 0.0024 17.6 6.6 1 23 57 79 57 79 0.98 2 16 0.00071 0.028 14.2 0.6 1 23 85 107 85 107 0.98 3 16 0.0062 0.24 11.3 0.5 2 23 113 134 112 134 0.97 4 16 0.17 6.5 6.8 0.1 2 19 141 158 140 161 0.92 5 16 3.7e-05 0.0014 18.3 0.6 1 23 174 196 174 196 0.98 6 16 1.5e-05 0.00059 19.5 0.8 1 23 202 224 202 224 0.96 7 16 0.0023 0.091 12.6 5.3 1 23 230 253 230 253 0.97 8 16 0.018 0.71 9.8 1.7 1 19 260 278 260 278 0.96 9 16 0.00063 0.024 14.4 4.9 2 23 278 299 277 299 0.96 10 16 0.0015 0.057 13.2 0.8 1 21 305 325 305 327 0.89 11 16 0.011 0.43 10.5 3.3 1 23 333 355 333 355 0.95 12 16 5.4e-05 0.0021 17.7 3.4 1 23 361 383 361 383 0.96 13 16 2.2e-06 8.5e-05 22.1 1.4 2 23 426 447 425 447 0.98 14 16 1.3e-06 5e-05 22.9 2.4 1 23 453 475 453 475 0.98 15 16 3.8e-05 0.0015 18.2 1.3 1 23 482 504 482 504 0.97 16 16 5.4e-05 0.0021 17.7 4.0 1 23 510 532 510 532 0.98
Sequence Information
- Coding Sequence
- ATGCACAATCCTGACCAGAATCTTCCGTCCAGTGAGACTCTGATATACGTGTGTAATGAAGAAGTCCAAGGTCAGGGGAAGAACATCAGAGATCAGGAAAATCTGCCAAATCTCGAAAGTTCTCTACCTGAAGGAGCACCTGGAAGCTTACAATCCCCAAAAGTACAATTCCCTTGCCACCTGTGCCATCAGAACTTCAGTAGGAAGAGCCTCCTGAAGCTGCACCGGAAGTCTCATCAGCTGTCAAAGCCCTACAATTGCAAGGAATGCTCCAGCGGCTTCAACAATCTCGACAACTTCTTGCTCCACATGGTGACGCACAAGACTCCTCCAGTCCGATGTCCTACCTGCAAGGTTGAGTTCCAACGAAGATCCAGCATCCGGGGACATATTAAACTGCATTTTAAGAGTGAAAATCTGACTTGTGCGAAATGTGAAGGCGTCTTTTCATTTCAAATGGACCTCCAGGAGCACTCTCAGCAGTGCCTGGGGAAGGAGAGAGTTCCGGCTGAGAAGCCATTTGAGTGTTCAGTTTGCCAGAAAAATTTTGGGAAGAAAAGTGTTCTGAATCGGCATTTATTGATTCACACGGGGAAGAAACCTTTCCGCTGTGACATTTGCCGGCAGACTTTCACCCAGAAAAGCTCCCTGGTGGTCCACAAAGTCATCCACACGGGTGATAGACCCCATCAGTGTCCTAAATGCTCCCTCAGTTTCATCCAGAAGACCAATTTGCAGTGTCACTTGAAAAGGCTTCACAGCAGTGAAAGTCAGAAGTTCCCGTGCAAAGAATGCTCCTGCAGCTTCCGGAAACTAAGTGCTCTGAGTCTCCATTGTACAATTTGTCCCATGAGATTCACGAAGAACTGTCACTTGAGGGAACATCTGATGCGACATCAGAACATCCGGCCGTTCCAGTGCGCAATTTGTGGGAAAACTTTCGCCACCAGAACCATCCTCGAGGTCCATGGACGCTGCCACACTGGCCAGAAACCCTTCTGCTGCCTAATGTGCGACAGGATGTTCACAACAGCATCCGCCTGCAGGAGGCATGCAGAAGTCCACAGCGTAGAGAAGAAATACGAATGCCAGAAGTGCAGGAAGAGGTTCAAAACCCAGGAATCCTTCAGGAAACACTCAATAATTCACGATGGGATGAAGCGTCAGAAACCACCTGAAGAGGAATATATACTTCCTTCGCTGGAGCCCATTGCCCTTCCTGCCCAGGAAATCCCTCAAATCAGTGAAAAATCCCGGAATGaaaaaaaCTACAAGAAGTGCCCGAATTGTTCGAAGAAATTCATCAAGCCAATTGATCTCCGGAGGCATCTGAGGACTCACACAGGAGAGCGTCCCTTTCACTGTGATGAATGTGGGAAATCCTTTTCCCTGGAATCCACCCTGAGGAATCACCGAAGAATCCACTCAAATGACAAGCCAAAGTTCACCTGCGTGACCTGCTTGAAGGACTTCTCCTCCAAAGACAACCTAAAAACCCACCTGACCGTCCACACGGGAGTCAAGTCCTTCGAGTGCCTCTACTGCGACAAACGCTTCCGGACGCTGTCCAACAGGAATGCCCACCACTCCACCCACCTaaaaaaaaTCAACAGCACAATCCAGGCAGAAGCAGAAAACTCCCGAAGAACAGTTCCCTCCTCCAGGGAAGTTCTCTCGAGCCCTGAAACCCTCActgaagaccctgaaaaccccgaaaaccTTCCCCCTCTCATTCCCATCCAATCTCAAACACTGTGA
- Protein Sequence
- MHNPDQNLPSSETLIYVCNEEVQGQGKNIRDQENLPNLESSLPEGAPGSLQSPKVQFPCHLCHQNFSRKSLLKLHRKSHQLSKPYNCKECSSGFNNLDNFLLHMVTHKTPPVRCPTCKVEFQRRSSIRGHIKLHFKSENLTCAKCEGVFSFQMDLQEHSQQCLGKERVPAEKPFECSVCQKNFGKKSVLNRHLLIHTGKKPFRCDICRQTFTQKSSLVVHKVIHTGDRPHQCPKCSLSFIQKTNLQCHLKRLHSSESQKFPCKECSCSFRKLSALSLHCTICPMRFTKNCHLREHLMRHQNIRPFQCAICGKTFATRTILEVHGRCHTGQKPFCCLMCDRMFTTASACRRHAEVHSVEKKYECQKCRKRFKTQESFRKHSIIHDGMKRQKPPEEEYILPSLEPIALPAQEIPQISEKSRNEKNYKKCPNCSKKFIKPIDLRRHLRTHTGERPFHCDECGKSFSLESTLRNHRRIHSNDKPKFTCVTCLKDFSSKDNLKTHLTVHTGVKSFECLYCDKRFRTLSNRNAHHSTHLKKINSTIQAEAENSRRTVPSSREVLSSPETLTEDPENPENLPPLIPIQSQTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -