Ppap008142.1
Basic Information
- Insect
- Phlebotomus papatasi
- Gene Symbol
- ZNF236_1
- Assembly
- GCA_000262795.1
- Location
- Scaffold687:40189-43459[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.6e-05 0.0037 17.0 6.6 1 23 57 79 57 79 0.98 2 17 0.0011 0.043 13.6 0.6 1 23 85 107 85 107 0.98 3 17 0.0096 0.37 10.7 0.5 2 23 113 134 112 134 0.97 4 17 0.23 8.9 6.3 0.1 2 20 141 159 140 161 0.92 5 17 1.8e-05 0.00068 19.3 0.7 1 23 174 196 174 196 0.98 6 17 2.3e-05 0.00091 18.9 0.8 1 23 202 224 202 224 0.96 7 17 0.0037 0.14 12.0 5.3 1 23 230 253 230 253 0.97 8 17 0.00064 0.025 14.4 2.1 1 23 260 283 260 283 0.97 9 17 3.5e-05 0.0014 18.3 2.4 1 23 394 416 394 416 0.98 10 17 0.00088 0.034 13.9 7.4 1 23 438 460 438 460 0.98 11 17 0.002 0.078 12.8 1.2 1 21 466 486 466 488 0.89 12 17 0.012 0.46 10.4 3.1 1 23 494 516 494 516 0.95 13 17 8.4e-05 0.0033 17.1 3.4 1 23 522 544 522 544 0.96 14 17 3.4e-06 0.00013 21.5 1.4 2 23 696 717 695 717 0.98 15 17 2.9e-07 1.1e-05 24.9 1.1 1 23 723 745 723 745 0.98 16 17 5.9e-05 0.0023 17.6 1.3 1 23 752 774 752 774 0.97 17 17 8.5e-05 0.0033 17.1 4.0 1 23 780 802 780 802 0.98
Sequence Information
- Coding Sequence
- ATGCACAATCCTGACCAGAATCTTCCGTCCAGTGAGACTCTGATATACGTGTGTAATGAAGAAGCCCAAGATCAGGCGAAGAACATCAGAGATCATGAAAATCTGCAAAATCTCGAAAGTTCTGTACCTGAAGGAGCACCTGGAAGCTTACAATCCCCAAAAGTACAATTCCCCTGCCACCTGTGCCATCAGAACTTCAGTAGGAAGAGCCTCCTGAAGCTGCACCGGAAGTCTCATCAGCTGTCAAAGCCCTATAATTGCAAGGAATGCTCCAGCGGCTTCAACAATCTCGACAACTTCTTGCTCCACATGGTGACGCACAAGACTCCTCCAGTCCGATGTCCTACCTGCAAGGTTGAATTCCAACGAAGATCCAGCATCCGGGGACATATTAAACTGCATTTTAAGAGTGAAAATCTGACTTGTGCGAAATGTGAAGGTGTCTTTTCATTTCAAATGGACCTCCAGGAGCACTCTAAGGAGTGTCTGGGGAAGGAGAGAGTTCCGGCTGAAAAGCCATTTGAGTGTTCAGTTTGCCAGAAAACTTTTGGGAAGAAAAGTGTCCTGAATCGGCATTTATTGATTCACACGGGGAAGAAACCTTTCCGCTGTGACATTTGCCGGCAGACTTTCACCCAGAAAAGCTCCCTGGTGGTCCACAAAGTCATCCACACGGGTGATAGACCCCATCAGTGCCCTAAATGCTCCCTCAGCTTCATCCAGAAGACCAATTTGCAGTGTCACTTGAAAAGACTTCACAGCAGTGACAGCCAGAAGTTTCCATGCAAAGAATGCTCCTGCAGCTTCCGGAAACTAAGTGCTCTGAGTCTCCATGTCAAGAAGATTCACCAGAAAGCTCAGGAGGAACTGGGGAAGGGAAATTCTGGAGAAGATGAGCAGGGGAAGTTTGTGAAGTTCACGGAATTCCGGGAAGATGGAACCAAAGTTCTGCATGCAGTAAAGGAGCTCCGGGAGGGAAATAGAAAGGTTCTGGAGTGCAATTTCTGCCAGAGGAAGTTGGAGGATTTCTGTGGGTGGCTTCAGCATCGACAGGAGCATGTGAAACCGCATCCGGAAGCCAAGAAACTGCCGGAAGGGCCGGAAAGAGCCCTGCCTGGCCGGAAGAGGCAGTTTCCGGAAGAAGCTGAAGaaaaaaaGACAGAGCCAGCGACAATTGTGTTCCAATGCAGCCGGTGCCCTTTGAGCTTCAGCCAGAAGACAAAATTTACTGCCCACTTGCGCCAGCACAACAGAGAACTCTCCCTGGAGCGAAAACTGAAGGCTGTGACGGAGACTATTGTCGCTAGGCCGCATCAGTGTACAATTTGTCCCATGAGATTCACGAAGAACTGTCACTTGAGGGAGCATCTGATGCGACATCAGAACATCCGGCCGTTCCAGTGCGCAGTTTGTGGGAAAACTTTCTCCACCAGAACCATCCTCGAGGTCCATGGACGCTGCCACACTGGCCAGAAACCCTACTGCTGCCTAATGTGCGACAGGATGTTCACAACAGCATCCGCCTGCAGGAGGCATGCAGAAGTCCACAGCGTTGAGAAGAAATACGAATGCCAGAAATGCAGGAAGAGGTTCAAAACCCAGGAATCCTTTAGGAAACACTCAATAATTCACGATGGGATGGTGCAGCAGGTGGATAAGGCTCCGGTAGAGTCAGAAAATACCCCTCAAATTCCTCTTCCTGAACTCACAGACCCCGTCCGGGAAGAAATTGTCCTTCAGCAGCCACTTGAGAATATTCCGGAAATTGATGGTCAGTGGCTGGATGAAAATCAACCAAAAACCTTTATAGTCATCCTGGATGATCAGAACTTCGAGCCTGTTGAGGAATTTCTGCCTGTTTTGGATGATACTGTGAGAAATTCACAGGAATTGTCACCTAACCTCATAAAAATCAGTCCGGTCGATGGGGAAACTGACAGTACAACAATCTTCTCTTGGACACCGCAGAAGCGTCAGAAACCACCTGAAGAGGAATATATACTTCCTTCGCTCGAGCCCATTGCCCTTCCTGCCCAGGAAATCCCTCAAATCAGTGAAAAATCCCGGAATGaaaaaaaCTACAAGAAATGCCCGAATTGTTCGAAGAAATTCATCAAGCCAATTGATCTCCGAAGGCATCTGAGGACTCACACAGGAGAGCGTCCCTTTCGCTGTGAGGAATGTGGGAAATCCTTTTCCCTGGAATCCACCCTGAGGAATCACCGAAGGATCCACTCAAATGACAAACCAAAGTTCACCTGCGTGACTTGCTTGAAGGACTTCTCCTCCAAGGACAACCTAAAAACCCACCTGACCGTCCACACGGGAGTAAAGTCCTTCGAGTGCCTCTACTGCGACAAACGCTTCCGGACGCTGTCCAACAGGAATGCCCACCACTCCACCCACCTCaaaaaaaTCAACAGCACAATCCAGGCAGAAGCAGAAAACTCCCTAAGAACAGTTCCCTCCTCCAGGGAAGTACTCTCGAGCCCTGAAACCCTCActgaagaccctgaaaaccctgaagtccctgaaaaccTTCCCCCTCTCATTCCCATCCAATCTCAAACACTGTGA
- Protein Sequence
- MHNPDQNLPSSETLIYVCNEEAQDQAKNIRDHENLQNLESSVPEGAPGSLQSPKVQFPCHLCHQNFSRKSLLKLHRKSHQLSKPYNCKECSSGFNNLDNFLLHMVTHKTPPVRCPTCKVEFQRRSSIRGHIKLHFKSENLTCAKCEGVFSFQMDLQEHSKECLGKERVPAEKPFECSVCQKTFGKKSVLNRHLLIHTGKKPFRCDICRQTFTQKSSLVVHKVIHTGDRPHQCPKCSLSFIQKTNLQCHLKRLHSSDSQKFPCKECSCSFRKLSALSLHVKKIHQKAQEELGKGNSGEDEQGKFVKFTEFREDGTKVLHAVKELREGNRKVLECNFCQRKLEDFCGWLQHRQEHVKPHPEAKKLPEGPERALPGRKRQFPEEAEEKKTEPATIVFQCSRCPLSFSQKTKFTAHLRQHNRELSLERKLKAVTETIVARPHQCTICPMRFTKNCHLREHLMRHQNIRPFQCAVCGKTFSTRTILEVHGRCHTGQKPYCCLMCDRMFTTASACRRHAEVHSVEKKYECQKCRKRFKTQESFRKHSIIHDGMVQQVDKAPVESENTPQIPLPELTDPVREEIVLQQPLENIPEIDGQWLDENQPKTFIVILDDQNFEPVEEFLPVLDDTVRNSQELSPNLIKISPVDGETDSTTIFSWTPQKRQKPPEEEYILPSLEPIALPAQEIPQISEKSRNEKNYKKCPNCSKKFIKPIDLRRHLRTHTGERPFRCEECGKSFSLESTLRNHRRIHSNDKPKFTCVTCLKDFSSKDNLKTHLTVHTGVKSFECLYCDKRFRTLSNRNAHHSTHLKKINSTIQAEAENSLRTVPSSREVLSSPETLTEDPENPEVPENLPPLIPIQSQTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -