Ppap005965.1
Basic Information
- Insect
- Phlebotomus papatasi
- Gene Symbol
- -
- Assembly
- GCA_000262795.1
- Location
- Scaffold87:84545-93829[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.9 35 4.5 1.4 2 20 206 224 205 228 0.92 2 19 8.5e-09 3.3e-07 29.7 1.6 1 23 234 256 234 256 0.99 3 19 0.1 4 7.4 0.0 3 23 273 293 271 293 0.95 4 19 0.4 16 5.6 1.7 3 23 301 322 299 322 0.93 5 19 0.0021 0.081 12.8 1.1 1 23 328 350 328 350 0.97 6 19 0.031 1.2 9.1 0.6 1 23 356 378 356 378 0.94 7 19 4.4 1.7e+02 2.3 1.1 2 23 385 407 384 408 0.91 8 19 1.6e-05 0.00064 19.4 3.8 1 23 413 435 413 435 0.97 9 19 2e-06 8e-05 22.2 1.0 1 23 441 463 441 463 0.97 10 19 8.4 3.3e+02 1.4 2.6 1 23 469 492 469 492 0.91 11 19 0.007 0.27 11.1 10.2 1 23 498 520 498 520 0.97 12 19 9.8e-06 0.00038 20.1 1.1 2 23 527 548 527 548 0.97 13 19 8.3e-05 0.0032 17.2 0.2 2 23 550 572 549 572 0.95 14 19 6.1e-06 0.00024 20.7 0.5 1 23 578 600 578 600 0.99 15 19 1.1e-05 0.00044 19.9 0.8 1 21 606 626 606 627 0.95 16 19 7.5e-07 2.9e-05 23.6 0.9 1 23 629 651 629 651 0.99 17 19 0.0005 0.02 14.7 0.5 1 23 657 679 657 679 0.96 18 19 0.00023 0.009 15.8 0.6 2 23 684 705 683 705 0.98 19 19 3e-07 1.2e-05 24.8 3.6 1 23 711 733 711 733 0.98
Sequence Information
- Coding Sequence
- ATGGAGTGTACCGAAATAGCGGACAACTGTCGGGCGTGTCAAACAAAGACAGAGGAAGACGTTCAGAAGATATTCATCTTTACCACAGTGAAGCTTCCGGAAATCTTCAAGGAAACCACATCCCTGGACATTCAGGAAAACGATGGACTTCCCAAAGTTCTATGCTGCTCCTGCTACGATCGCCTCCTGGAAGCCTACAACTTCCGGAAAATGTGTTCTGCTGCAGCTCTGCACTTCCAGAAGATCCTGTCAATGGGTGTTCCGGAAGAGAAATACGTCTCATCTGAAGTTATAATTAAAACAGAGCCTGGTGTTTCGGATGTGCCTGATTCTCCTCCAAGGAACCTAAACTACCCTCCGGACAGAGAAGATTCTCACAGTAACATCTCTGATATGCTGTCTATAGATGAAAATCTTCCGGAAATAATTAAAAGTGACCCATATGAAGAAGTTATGAATGAGGAAAATGATTCTGATGTGTCTAACACTTTTCCGGACTCAGATGATGCTCCCCTAACCTCAAGAAGGATCAAGAAAGCAAATAAAGGGCCAGAAAAATCTCCTGAATTGCAGAAAGCCAAGGAAGATATTCCTCAGGGAAAGCCTTTAAGGCTTGAGTGCAGCTTCTGCCACTCATTGTACTATCAGAAGTATAATCTGAGCATGCACATTTGGAAAGAGCATCTGAAAATGAAATATTATGAATGCAAAATCTGTGGGAAGGAATTCAAAACATCTTCCTCACTAAGGAACCACCAAAATACCCACAAATTTGAAAAAGATGCTGAAAATCAGAAGATAGGTAATCAGCAAATCTGTCTACTATGTGGAATTGATACCATTGCTGCCGAGGAGTTAAAGAGCCATATGGCTACTCACAAGAAAGAAGATATGTGGTGCTGTGTATCTTGCCCCTATAAGACACCTAAAAGGCACGGTTTACAGAATCACGTGAAGGTAGTTCATCGGGGAATAAGGGATTTCCATTGTCCACGATGTGGACAATCTTTCACCACTGGAGCTATTCTCAAGCAACACCTGCTTCGTCATGAAGGTATTAAGAATCATGAGTGCTCGGTATGTGGAGTCAAGAAGGTAACACGAAGAGAATTGAGGAGCCACATGGTTGTTCACATGGAGGAGAAAATGTGGTCTTGCGAATTTTGTGCCTTCAAGTCCAATCTGCGAGAAAGTCTGAAGCAGCACGTAAAAGCAGTTCATCATAAAATAAAGGAACATCACTGCTCACAATGTGACAAATCCTTTGCGAGGGCTACCACTCTGAAGAATCATTTAATGGTCCACACTGGAACAAAGCCTCATCCCTGCAGCGAGTGTGATAAGAGTTTTGTCTCATTGACTAAACTGAAGATCCATATGAATATTCACACAGGAGAAAACGTTTTCTCATGCAAATTTTGTTCATTCACAACTCTTCGGAAATTCCAAATACGACGCCATGAAAAGGCTGTTCATGAGGGAATTAAGGATCATCACTGTCCCCATTGTACGAGATCATTTGCAACTTGTATGGCTCTGAAACATCATGTAATGACTCATACTGGAGAAAGGCCACGAGTCTGCGGAGAATGCGGGAAGAGATTCTTACAACTCTCAACTTTGAAGAAACACATGAAGACTCATGTACCGTGCAAGTATTGTTCCTTGATCTTCACTCGGATCGACAATCTGAAGCAGCACGTGAAAATAGTCCATCAGGGAATAAAGAAATATGAGTGCTCTGTGTGCAACAAATCTTTTGGTGTTTCCAGGAGTCTCAAGGATCATTTAATGACCCATTCTGGAGAAAAGCCCCATGTCTGTAGTGAATGTGGGATGAGCTTTATAAGACGAACACGATTGAACAGACACATGAGAAACCAATATAAATGTTCTGTGTGCAATAAATCCTTTGGGGTTGCCAAGAACCTGAAAAATCATTTAATGACCCACACTGGAGAAAGACCTCATGCCTGCAGCCTGTGTCCTAAAACCTATATCGCACTCGACCAACTAAAAATTCATATGACGTCACACACAGGGGAAAATAAGTGTCCCCAGTGCAAGAAAATTCTAAGAAGCGCCAAAGGCTTGAAATATCACATGATGATCCACACAGGAGAGAAGCCATACCATTGCGATGAATGTGGGAAGGGATTTAGGCAAAAATTTTCACTaaaaaaaCATATAAACACTCATCTAAAGTCCAGGAAGAAACCAAAGATTCAGGGCAAATCCAAAAGAAAGTCAAAATCTGAATCGAATCTTAAATCCTAA
- Protein Sequence
- MECTEIADNCRACQTKTEEDVQKIFIFTTVKLPEIFKETTSLDIQENDGLPKVLCCSCYDRLLEAYNFRKMCSAAALHFQKILSMGVPEEKYVSSEVIIKTEPGVSDVPDSPPRNLNYPPDREDSHSNISDMLSIDENLPEIIKSDPYEEVMNEENDSDVSNTFPDSDDAPLTSRRIKKANKGPEKSPELQKAKEDIPQGKPLRLECSFCHSLYYQKYNLSMHIWKEHLKMKYYECKICGKEFKTSSSLRNHQNTHKFEKDAENQKIGNQQICLLCGIDTIAAEELKSHMATHKKEDMWCCVSCPYKTPKRHGLQNHVKVVHRGIRDFHCPRCGQSFTTGAILKQHLLRHEGIKNHECSVCGVKKVTRRELRSHMVVHMEEKMWSCEFCAFKSNLRESLKQHVKAVHHKIKEHHCSQCDKSFARATTLKNHLMVHTGTKPHPCSECDKSFVSLTKLKIHMNIHTGENVFSCKFCSFTTLRKFQIRRHEKAVHEGIKDHHCPHCTRSFATCMALKHHVMTHTGERPRVCGECGKRFLQLSTLKKHMKTHVPCKYCSLIFTRIDNLKQHVKIVHQGIKKYECSVCNKSFGVSRSLKDHLMTHSGEKPHVCSECGMSFIRRTRLNRHMRNQYKCSVCNKSFGVAKNLKNHLMTHTGERPHACSLCPKTYIALDQLKIHMTSHTGENKCPQCKKILRSAKGLKYHMMIHTGEKPYHCDECGKGFRQKFSLKKHINTHLKSRKKPKIQGKSKRKSKSESNLKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -