Ppap001358.1
Basic Information
- Insect
- Phlebotomus papatasi
- Gene Symbol
- -
- Assembly
- GCA_000262795.1
- Location
- Scaffold43446:3641-9124[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.4e-06 0.00021 20.9 1.6 1 23 64 86 64 86 0.97 2 19 2.6e-06 0.0001 21.9 1.4 1 23 92 114 92 114 0.97 3 19 0.00052 0.02 14.7 0.4 1 23 133 155 133 155 0.95 4 19 0.0019 0.073 12.9 2.8 2 23 163 184 163 184 0.97 5 19 0.0018 0.069 13.0 1.9 1 23 201 223 201 223 0.97 6 19 4.2e-06 0.00016 21.2 2.1 1 23 235 257 235 257 0.96 7 19 4.9e-06 0.00019 21.0 4.3 1 23 261 283 261 283 0.98 8 19 9.4e-06 0.00037 20.1 2.3 1 23 289 311 289 311 0.97 9 19 0.00025 0.0098 15.6 2.8 1 23 317 339 317 339 0.96 10 19 3.7e-06 0.00015 21.4 1.3 1 23 345 367 345 367 0.98 11 19 0.068 2.7 8.0 0.2 1 23 453 476 453 476 0.93 12 19 0.0011 0.043 13.6 5.6 1 23 491 513 491 513 0.99 13 19 0.0041 0.16 11.8 0.8 1 23 519 541 519 541 0.97 14 19 5.6e-05 0.0022 17.7 0.1 1 23 547 569 547 569 0.98 15 19 2.8e-05 0.0011 18.6 0.6 1 23 575 598 575 598 0.98 16 19 0.00084 0.033 14.0 0.8 1 23 604 628 604 628 0.98 17 19 0.0016 0.063 13.1 0.1 2 23 635 656 634 656 0.95 18 19 0.0026 0.1 12.4 3.6 2 23 661 683 660 683 0.96 19 19 0.00042 0.017 14.9 4.8 1 23 688 712 688 712 0.91
Sequence Information
- Coding Sequence
- ATGAGTACTAAGAATCCTAAGGATAAACCTGAGATTATACATGTGGATATCCCACCAGAGTTTATCTTGTGCAATGTGGAATATGAAGATTGTGATGATAACAGCACAGAAAAAGCGAAAAATAAGAAAAACGCATCACAAAAGCCTCCAAAGAAGGCAAAGTCCAAGAAGGTATCAGCACCAAAATCATTTCCTTGCTCAACTTGTGGGATGATTTTTACTCAGCAGAAACACCTGAAGCGTCATGAATTAATACACACAGGGGAAAGACCTTTTGCTTGTGATATATGCAGCAAAACTTTCAATAGGAAAGACACCTTGGTGAATCACAAACGGTCGCATGATGGACAAAAGATTAAAGTGGAGTCAGGTGTACAGCAGAGACAATTGCATGAATTTGAATGTCCTTCATGTGGAGAGATATTCAAGGATAAGGAACAGCTTCGTTTCCACAGAACCATACATGCTAAATCGCATGAAATCAACACTTGTACAATATGCAAGAAAGTCTGCGAAACGACTGATGAATTGAGAGATCACTATTTTACTCATACTGCAGATGTTCAGGAGGAGCAGGAGGAGACGAAGAGAGCAAAGGTATTCGACTGTCAACACTGCTACAAGAGTTTTCTCAGTCCTGAATTACTGCGAGAACATCTGCAGAGTCATGGTGTTATGCCTCTTGCTGTTGATGAGATTTTGCATAAATGCAATTTGTGTGGGAAGACATTTAGTCAAGTGTCTTCCCTGCGGCAGCACGAAGGAACCCATAGGAAGGATTTTCCCTGCAGTTTTTGCGAAAAATGCTTCAATCGTAGAGATAAACTTGCTAAACACATGAAAATGCATAAAGATGCTAAGCCTTTTGCTTGTACAAAGTGTGGGAAGAGTTATGACGATCAGTTCAAACTGGACCATCATATGCGTGTTCACTTTGGGACGACTGATCATGTCTGTCTTATTTGCAATAAGCACTTCCAGGCAGCTAAGAATCTGAAGCGTCACATGATCTTGCATACAGGTGAGAAGCCATATCAGTGCGATCACTGCGGATCAACCTTTCCGCGTAGGGACAAATTGACAGCGCATCTGAAAGCCCATGCTGGTCGTGGAGAGATCGTTTTGGACAAAGATACTCCAAAAAAGACCCAAAAGGCAGTACTTCCAGATACATTCCATCAGAGCTCAAGCACCGAAACTAAGAAATTGGATTCCAATGAACCACCCAGGGAAGTAGTTAAAGGGGTGTCCTCCATAATGCCCCCAGATTCACCTTACATGTCTGAGGATGATGAACCAGAAGATATTCAGATGATTGAAGAGTCTGAGGTAGAAGAACCAAATGAAGATTCCATCTATGACTGCGTCTATTGCTACAAAAGCTTCCTGCTACTCGATCTACTGCGGGATCATATGGAAGAAGCTCACGATATAGAGATGAGTGCCAAGGACCTGTTGGAACAATTTCGTTTCACCTGCTCGCTATGCAAAAATGAATTTAGCAATCAGCAAACATTCAGTCACCACATGAAGACCCATACTAAGCAGAAAACATTCAATTGCACAATCTGTGCTATGAGCTTTGATCGATACTTCCAGTTGGTCAGTCATTCGAAAGTTCATCAATCTCAGAAAGCTTTTCCCTGTCAATTGTGCGGTAGAAGTTTCGATGATGCTGTACGTTTGGAGAACCATACAAAAGTCCATACGAACCAGAAGGACTTCAAGTGTACAATTTGCGAAGTTGGCTTTCAATCAATGAAAAATCTCAGACGTCATATCCAGACAATCCATTCAACGGACAAGCCCTATACCTGCTCAGAAGAAGGATGCAATATGTCATTTGGTCGAAAAGACAAATACGTTCTCCATCAGCGATACCATGAACGGATGAGAAATATAAAGTGTCGGAAATGCGATAAAATACTTGGGAGCCAGGATGAACTTCAGGAGCATATGGTTGAGCATATAAACTTCACAAAGTGTGACCACTGTGATGAGACTTTTGTGAAACGGAAGGATATGCTGCAGCATAAGAGACTACGCCATACTCCGGATTTGTTTGCTTGTTCAGGATGTGGGAAAAATTTCCAGAAACAGAGATACCTCAAGAAACATCTGAAGAAGTCTTGTCACAAAAAACTTGAGAAAAAGAATGGTCCAGAGAAGAGTCACACTGTAACCAGAAGTAATAGCGCAATTGTTAAGGAAGAACCTGTAGAGGACGACGATACAGATGATTCATTAGAATAG
- Protein Sequence
- MSTKNPKDKPEIIHVDIPPEFILCNVEYEDCDDNSTEKAKNKKNASQKPPKKAKSKKVSAPKSFPCSTCGMIFTQQKHLKRHELIHTGERPFACDICSKTFNRKDTLVNHKRSHDGQKIKVESGVQQRQLHEFECPSCGEIFKDKEQLRFHRTIHAKSHEINTCTICKKVCETTDELRDHYFTHTADVQEEQEETKRAKVFDCQHCYKSFLSPELLREHLQSHGVMPLAVDEILHKCNLCGKTFSQVSSLRQHEGTHRKDFPCSFCEKCFNRRDKLAKHMKMHKDAKPFACTKCGKSYDDQFKLDHHMRVHFGTTDHVCLICNKHFQAAKNLKRHMILHTGEKPYQCDHCGSTFPRRDKLTAHLKAHAGRGEIVLDKDTPKKTQKAVLPDTFHQSSSTETKKLDSNEPPREVVKGVSSIMPPDSPYMSEDDEPEDIQMIEESEVEEPNEDSIYDCVYCYKSFLLLDLLRDHMEEAHDIEMSAKDLLEQFRFTCSLCKNEFSNQQTFSHHMKTHTKQKTFNCTICAMSFDRYFQLVSHSKVHQSQKAFPCQLCGRSFDDAVRLENHTKVHTNQKDFKCTICEVGFQSMKNLRRHIQTIHSTDKPYTCSEEGCNMSFGRKDKYVLHQRYHERMRNIKCRKCDKILGSQDELQEHMVEHINFTKCDHCDETFVKRKDMLQHKRLRHTPDLFACSGCGKNFQKQRYLKKHLKKSCHKKLEKKNGPEKSHTVTRSNSAIVKEEPVEDDDTDDSLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -