Ppap009554.1
Basic Information
- Insect
- Phlebotomus papatasi
- Gene Symbol
- -
- Assembly
- GCA_000262795.1
- Location
- Scaffold143:149510-162991[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.35 14 5.7 1.1 1 10 57 66 57 79 0.81 2 32 0.00023 0.0089 15.8 0.6 1 23 85 107 85 107 0.98 3 32 5.1e-05 0.002 17.8 2.2 1 23 113 135 113 135 0.98 4 32 1.4e-05 0.00056 19.5 1.2 1 23 141 164 141 164 0.97 5 32 0.013 0.49 10.3 1.7 2 23 178 199 177 199 0.97 6 32 1.1e-06 4.3e-05 23.1 3.2 2 23 206 227 206 227 0.98 7 32 0.022 0.87 9.5 1.3 1 23 233 255 233 255 0.91 8 32 0.00054 0.021 14.6 3.1 2 20 261 279 261 283 0.94 9 32 1.4e-06 5.6e-05 22.7 0.8 1 23 306 329 306 329 0.97 10 32 0.0072 0.28 11.1 0.3 2 23 339 360 338 360 0.96 11 32 6.3e-05 0.0024 17.5 1.8 1 23 366 388 366 388 0.98 12 32 0.045 1.7 8.6 0.2 1 23 395 417 395 417 0.96 13 32 0.93 36 4.4 3.0 2 23 424 448 423 448 0.95 14 32 0.055 2.1 8.3 0.6 1 19 453 471 453 475 0.95 15 32 0.00015 0.0058 16.4 1.7 1 23 526 548 526 548 0.96 16 32 0.0037 0.15 12.0 3.0 1 23 554 576 554 576 0.97 17 32 1e-06 4e-05 23.2 0.8 1 23 582 604 582 604 0.98 18 32 0.00041 0.016 15.0 0.2 1 23 610 633 610 633 0.97 19 32 0.093 3.6 7.6 4.3 1 23 646 668 646 668 0.98 20 32 2.1e-05 0.0008 19.1 0.3 2 23 675 696 674 696 0.97 21 32 0.082 3.2 7.7 1.2 1 23 702 724 702 725 0.87 22 32 0.0011 0.041 13.7 0.2 3 23 739 759 738 759 0.96 23 32 0.002 0.079 12.8 6.2 1 23 765 788 765 788 0.97 24 32 0.0013 0.051 13.4 0.6 2 23 800 821 799 821 0.97 25 32 0.0034 0.13 12.1 2.1 1 23 827 849 827 849 0.96 26 32 0.41 16 5.5 0.2 1 23 856 878 856 878 0.95 27 32 0.09 3.5 7.6 0.3 1 23 884 909 884 909 0.92 28 32 0.35 14 5.7 0.3 1 21 914 934 914 935 0.94 29 32 1 40 4.3 0.6 1 10 975 984 975 997 0.85 30 32 0.22 8.6 6.4 3.8 1 23 1003 1025 1003 1025 0.85 31 32 3e-05 0.0012 18.5 3.1 1 23 1029 1051 1029 1051 0.97 32 32 0.00057 0.022 14.5 0.3 1 23 1057 1080 1057 1080 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGTGAAGTACAAAAATATATAGTTGATTGTAGTATAGTGAAGGAGGAGTATGTTGTTAAGGAAGAAATTGTGCCAATTCTTATCGCAAAAACAGACGGTGAATTTTTACCAAAGCCCCCAAAAACGCTAAAGCCTGCGATCAATAAAATTAAGACAAAGAAACACATTTGTTCTCACTGTGGAAAGGCATTTCAGTGGCGCCGAGATGTTCGGTTTCACATCACCAAACATTCCAAAGAAAAGAAGTTCCAATGCACAAAATGCTTAAGAGCCTATGCCGATCAATCCAGGCTGAATATCCATCTTAGGCTTCACTCCAATGAGCACTCTCATGAGTGCAAACTTTGCTGGAAAATTTTCAAAAATGCCGAATATTTGAGGCTTCATCTTAAACGGCATCTTGGCATTAGGAATCACGAATGTCCAGTTTGTGGTAAAAAATTCATTGACACCAGGAACTGGAGGTATCACATGCAGAAGGTCCACGAAGAGGTTAAGCTCAAAGGTCTTCCCAGGAGCAGGTGGACTTGTGATATTTGCGGAACATTCACCATGGACAAATGTTCATTTGAAAAGCATTTACTGAGCCACAGTGATGTGAAAACGGCCGAATGTCCAATTTGCCAGAAGAAATTTAAGCATGAATCCTATCTTAAGACTCACATGAATACTCACGGAACAGAAAGGCCATTCTTGTGCGTTATTTGTGGCAAAGGATTCAAAACAAAAGTCACTCACAGATCTCACCAAGTGATCCATTCAAACGAATTTAGAAAGTGCCCCTATTGCAATAAAATGTACAAGTACAAGGAGACATTCAAGAGACACATCTGGAACCACCACAGAGGACTTCCTTTTGAGATAAAAGCTCTCCAGAAGCACGTAATCATTCATGCTGATGAGTTGCCCTTTGTATGTGAGCTCTGTGGGAAAGGATTCAAAGACAAACGTAAATTGCGGACTCACATTCGATTAATGCACGAAAGATATTCACAGAATAGAGTACTAAAGTGTCCTCAGTGTGGAAAAGGATGTCGAGGAGAAACCTTTTTGGCCATGCATCAAGCCATTCACAATAATGAAGCTCTATTTGAGTGTGCCATTTGCTCAAAGAAATTTAAGAAGAAATCACAAATAAAGCAACATGTACTGACACATAGTAAAAGTAGGAAGATGTATTCATGTCAAATCTGCGGAATTGAAAGAACTAGCGCTAGGAGTATTAGAAAACACGAGGCAAAGCACAATTCTGAGGGTACTCTAAAATGTCCGGCAAAGAAGTGTCAAATGATTTTCTGCCATATCAAGAACCGAAATGAACATATCGAAAAGGAACACAAAGAGTTCAAGTACATTTGCAAAATTTGTGGAGATATGGTAAAGCATAGGAAGAACTTGAGGGAACATGATGTGAAGCATAGAGCTGAGGGTCGGACTAAGCGGTACAAACCCACgaaaacagtaaagaaaatcaaaaaagaagtaaagatggaagaagatgtgaagattgaggtaaaagaaattaaaagtgaaCCTCAGGAAAATCTTCCCCGGAAGAAAGAAAAGAAGCATATCTGTGCCATATGTGGTAAATCCTTTTATCATCCACGTGATATTCGGTATCATATGAGTGTCCATTCAACCGAGAGAAATTTCCATTGCCCAAAGTGTCCTAAGAGATTCACGAGTGATTTGAGGATGAGAACACATCTGAGAATTCACGAAACTGACGGAATCTTTCCATGTAAGCTCTGTGGGAAGATTTTCAAAAATTCAGAATACCTCCGGATTCACCTGAATAGACATGCGGGCATTAAAAAGTTCGAATGCACAGTTTGTGGCTTGATGCTGGCAGAAGCGAGGAATTTGAAGCAGCATATGTTGCGATTTCATCAAGAAGAAACCGTCAAAGTGCTTCCAAAAAGCCAGTTTACTTGCGATCACTGTGGAAAAGATTGTCTGGATAAAAAATCATACAAAGGACACATTCTTTCGCATTCCGATGTAAGGAATGTTCCATGTCCAGTGTGTCAGAAAATGTACAAGAGCGAGGATCATGTCAAGGCTCATATGAAAGTTCACAACAAATATACTCCCTTTGCCTGTATAATCTGTAACCATGCTGTGAAAACTCGAGGAAACCTGGCAAAGCACATGTGGACCCATCATCGTGGAATTCCGACAGATTACAAAGAGGGTCCCGTTGCCTGTACGGCCTGCAATGAAACTTTTAAGAACTTTGATGCTCTGCAGAAGCATGTAATTGTGCATTCGGAAGAAAAACCTTATCAATGTCCGACCTGTGGGAATTGCTATCGTCATCACAGGAGTATGAGAAATCACATTCGAGAGGTCCATGAAGACAATAAAGAACGTCCCAATAGAGTGTTAAAGTGTCCGCAATGTGGTAAAGGATGCAAGGGGCAAACCTTTTTAGCCTTGCATCTAGCTACTCATAGTAATGAGGCTCAGTTTGAGTGTGCCATTTGCTCAAAGAAATTCAAATTGAAATCCCACATAAGGCTGCATGTTGTGAGGCACAGCAAAGAGAGAAAAATGTACTCTTGTAGAATTTGTGGAGTTGAAAGAACAAGTGCAAGAAGTATTCGGAGTCATGAGGCGAAACATAACTCAAGAAAGTATTTCAATTGCCTTGCAGAAGATTGCAAATTGATCTTTTCAAATAAGAAAGCTCGAAATGATCATATCCTCAAGGACCACACGGAATTTCAGTATACTTGCGGCAAATGCAAAGATATGGTCAAGGATGAAGAACATTTGCGAGAGCATGAGAAGATGTGCAAAAATGATGGGAAGAAACCATACAGAGAGAAACATTCCAAGGATAAAAGTCTATCAAAAGGGAAGAAAGATAGAATTTCATGTGATAAAGAAAAGGAAATACGAGAGAAGAAGCATATTTGTGCTCATTGTGGTAAAGCATTCATGTGGCGCCGAGACATTCGATTTCACATCACAAAGCATTCCAAAGAGAAAAAGTTCAAGTGTCCTCACTGTCCACGACGCTATCCCGACAAACACAGACGAGACGTACATTCAAAACTGCACGGGAATCCACATGAATGCAAACTCTGTGGCAAAGTCTTCCAGAATTCTCGGTATTTAAAGCTCCATCTACAAAGACATCTTGGATTGAAAAGATTTGAATGTGATATTTGCAGCAGGAAATTTCCGGAAGCAAGAAACTGGAGGTATCACATGGAGCGTGTACATCAAGTGGATAGTGCAAGTGTTCGAGATTACAACACTCGTTCTAAAAAGACTGATGACAATTTAATACAATCGACAATAATTCAAAAGACTCAAATTAAAACTGAAAATGCGACTGAATTCGGTATGGAGTATCCAAGAATCAAGATTGAAGATGATGATTCGACTTTCATTAAAGTGGAAGAAGTGAACGAGATTTGA
- Protein Sequence
- MESEVQKYIVDCSIVKEEYVVKEEIVPILIAKTDGEFLPKPPKTLKPAINKIKTKKHICSHCGKAFQWRRDVRFHITKHSKEKKFQCTKCLRAYADQSRLNIHLRLHSNEHSHECKLCWKIFKNAEYLRLHLKRHLGIRNHECPVCGKKFIDTRNWRYHMQKVHEEVKLKGLPRSRWTCDICGTFTMDKCSFEKHLLSHSDVKTAECPICQKKFKHESYLKTHMNTHGTERPFLCVICGKGFKTKVTHRSHQVIHSNEFRKCPYCNKMYKYKETFKRHIWNHHRGLPFEIKALQKHVIIHADELPFVCELCGKGFKDKRKLRTHIRLMHERYSQNRVLKCPQCGKGCRGETFLAMHQAIHNNEALFECAICSKKFKKKSQIKQHVLTHSKSRKMYSCQICGIERTSARSIRKHEAKHNSEGTLKCPAKKCQMIFCHIKNRNEHIEKEHKEFKYICKICGDMVKHRKNLREHDVKHRAEGRTKRYKPTKTVKKIKKEVKMEEDVKIEVKEIKSEPQENLPRKKEKKHICAICGKSFYHPRDIRYHMSVHSTERNFHCPKCPKRFTSDLRMRTHLRIHETDGIFPCKLCGKIFKNSEYLRIHLNRHAGIKKFECTVCGLMLAEARNLKQHMLRFHQEETVKVLPKSQFTCDHCGKDCLDKKSYKGHILSHSDVRNVPCPVCQKMYKSEDHVKAHMKVHNKYTPFACIICNHAVKTRGNLAKHMWTHHRGIPTDYKEGPVACTACNETFKNFDALQKHVIVHSEEKPYQCPTCGNCYRHHRSMRNHIREVHEDNKERPNRVLKCPQCGKGCKGQTFLALHLATHSNEAQFECAICSKKFKLKSHIRLHVVRHSKERKMYSCRICGVERTSARSIRSHEAKHNSRKYFNCLAEDCKLIFSNKKARNDHILKDHTEFQYTCGKCKDMVKDEEHLREHEKMCKNDGKKPYREKHSKDKSLSKGKKDRISCDKEKEIREKKHICAHCGKAFMWRRDIRFHITKHSKEKKFKCPHCPRRYPDKHRRDVHSKLHGNPHECKLCGKVFQNSRYLKLHLQRHLGLKRFECDICSRKFPEARNWRYHMERVHQVDSASVRDYNTRSKKTDDNLIQSTIIQKTQIKTENATEFGMEYPRIKIEDDDSTFIKVEEVNEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -