Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 5.3e-05 0.058 12.7 0.6 7 33 2 25 2 32 0.79

2 6 0.049 54 3.2 0.3 10 28 34 51 25 64 0.80

3 6 0.33 3.6e+02 0.6 0.6 18 39 69 91 53 93 0.75

4 6 0.00015 0.17 11.3 3.5 5 43 85 118 82 119 0.80

5 6 1.4 1.5e+03 -1.4 0.2 18 25 131 138 130 141 0.77

6 6 2e-06 0.0022 17.3 1.3 13 43 154 181 143 182 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	5.3e-05	0.058	12.7	0.6	7	33	2	25	2	32	0.79
2	6	0.049	54	3.2	0.3	10	28	34	51	25	64	0.80
3	6	0.33	3.6e+02	0.6	0.6	18	39	69	91	53	93	0.75
4	6	0.00015	0.17	11.3	3.5	5	43	85	118	82	119	0.80
5	6	1.4	1.5e+03	-1.4	0.2	18	25	131	138	130	141	0.77
6	6	2e-06	0.0022	17.3	1.3	13	43	154	181	143	182	0.84

Coding Sequence: ATGTTTAGACCAAAGGATGAGATCAGGAAGAAGTTTACGTGTAAAGAATGTGGAAAGCAGTATAACGGAAAAAGTGATTTCCAGAGACATGTGTTGATTCATTTAGAAGAAACTGACATCAAATGCCCTGAATGCCCAAAGAAATTCAAGCAACAGAAACATTTGGATATACACATGGACTTTCATAGGAAAGTAAAACCATTTATGTGCGAGATTTGTGGAATTCCTTTTAAAACTCCTGGACTTCTTACCAAACACGTTGCCAGGCATCTGGATAAATCTATTGTTTGTCCGCATTGCAAAAACATCTATAAAAATAGGTTATCTTTTAAGGATCACATGAGAGATCTGCATAAGGGTCTTCCAATTGATATTTCAGTTCGTCCTCTTTATTGTACAATATGCAAAGATCGTTTTAATGATTTGGATAGCTTGAGGGATCATGTTAAGATTCACAATTACAGTGGAGCCTTTGAATGTGGCTACTGTGGGAAACTTTTCAGGAGGAAAAACAATTTAAAAACACACCTTTTGAAAGTTCATACA
Protein Sequence: MFRPKDEIRKKFTCKECGKQYNGKSDFQRHVLIHLEETDIKCPECPKKFKQQKHLDIHMDFHRKVKPFMCEICGIPFKTPGLLTKHVARHLDKSIVCPHCKNIYKNRLSFKDHMRDLHKGLPIDISVRPLYCTICKDRFNDLDSLRDHVKIHNYSGAFECGYCGKLFRRKNNLKTHLLKVHT

Sequence clustering based on sequence similarity using MMseqs2