Parg001821.1
Basic Information
- Insect
- Phlebotomus argentipes
- Gene Symbol
- -
- Assembly
- GCA_947086385.1
- Location
- CAMTYR010000041.1:5578787-5580728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.2 1.6e+02 2.5 1.6 2 13 202 213 201 215 0.86 2 13 0.002 0.077 13.0 2.4 2 23 222 243 221 243 0.94 3 13 4e-05 0.0016 18.3 2.7 1 23 249 271 249 271 0.97 4 13 3.3 1.3e+02 2.8 0.4 1 23 277 302 277 302 0.89 5 13 0.0017 0.067 13.2 0.7 1 23 310 333 310 333 0.98 6 13 0.29 11 6.2 3.5 1 23 366 390 366 390 0.93 7 13 0.074 2.9 8.0 1.7 2 23 400 422 399 422 0.95 8 13 0.04 1.6 8.9 3.2 2 23 454 475 453 475 0.95 9 13 0.00035 0.014 15.4 1.3 2 23 481 502 480 502 0.97 10 13 7.2e-05 0.0028 17.5 2.3 1 23 509 531 509 531 0.98 11 13 0.1 3.9 7.6 1.9 1 23 537 561 537 561 0.96 12 13 0.00024 0.0095 15.9 0.8 2 23 569 591 568 591 0.96 13 13 0.00068 0.027 14.4 1.7 1 23 591 613 591 613 0.98
Sequence Information
- Coding Sequence
- ATGCCGGACGTGAAGTTAGAACTATTTTCAGTGAAACAGAGAGTTTTCCTAGTGAAGCACTTCTACCAGAGCTTTGGAGACTACAAACTGGTCAAGAGTGATTATGAGACATTCTACGGAGCACCGCAGTTTTATCAACTCACGGACGAAGCAATCGCAGAGCTAATTGAACTGTTTGAGGACACTGGAAGTGTGCTAAAGTCCATTCGAATGATGGCTCAGAAGGTTTCTGGCAAGGAAATTCCCAGTCTAATTCCTATCACAAGTTCTAAGACTGAAGTTGGCTCAGAAGTCTCTGCGGAAGAAACTGAGAAAAGCACAACCGGTCATAATGATCCTCTGGAAGATCTGGACTGTTTTACTAAGGAGGAGTATGAGGTTCAGGAGGCAGATGAAGTAATTCATGAGGAATATCTGGAGGAAGCTGCAATGAAGGAAAAACCCTCAGAAAAACCACCGAAACAGTCTGTGCATTCTATCCGTGCTCAGAAGATCAGAGTGATCCGAATGAATGAACTTCTAGAGGAGACAATTGAGTACACAGATGATGAGGATCAACTCCAGGAAGTGGAATCATCTATTGGAGAGCCTGAAGGTATTATCACGTGTCTAAAGTGCGACAAGAAATGCAAGACTCTGAAGGAGCACAAGTGCTTTCTTCTTTCCtgcacgtactgccggaagaaattcccgcgaaaagaCCTCGTAAAGCACATGAAAAGGAATCACAACAACAGAAAGCTGCACAGCTGTGAATTCTGTGGGAAATTCTTCATCCGCAAAGACGATATGCTGAGCCATCGAAGGATTCACACCAAAGAGACTCCTTTCACGTGTCGCGCGCAGGGATGCAATGCGAAATTTCACTGGAGAGCAGCCCTGAATAGGCACGAACTGCTGGTGCACATCAAAGAGAGCACGGAAAGGTACAAATGCAACTTCTGTCCGGCTTCTTATCGACTCAAGGAGTACGTTGTGAGTCACATGAAGCGATGGCATGACTACAAGGAGACTGATAGTGAGACAGTGACGGAGGAGAGTTGCCATAAGACGTGGAATGGACCTGAAACCGCTCAGAATTCCTCACTCAGGCCCTTCATTTGTAGCTTTAAGGGATGCGGCAAGTCATTTTGCTGGCGTCAATCCCAGAAAAGGCATGAACAGTCTCACAAAGAGGATAACAACGACAACAGATTGAAGTGCGAATATTGCTTCTACTTCAGCTACAGCCAGAAATTTCTAGACAAACACATGGCGAAAGAGCACATAAGTCCTCATCAGGAGATCTCATCGCTAGGCACGTGTGACAATTGCAATGAAAACATCCCGAACGGTCAAACACACTGCTGCGATCTCGTCACTTGCTTGCACTGCCGGGAGAAGTTCTCCAAGAGCGAAATGACGCGACATTATCAGATCAAGCACGCCCAGGAAAAGCAAGTGTGCCAAGTGTGCGGCAAACGCTTCCACGACTTGCAAGCCTTTCTCAACCACCAGAAGATCCACGAGGATCAGCAGAGACTCTACGTGTGCAGCACCTGCGGAAAGATCTGCCAGCGGAAGTACGATCTGCAGAGTCACGAGAAGGTTCACAGCCAGGATCGACCGTACACCTGCCAAATCGAAACGTGTCGCAGGAGCTTCGCATGGCTTCACTCACTGAGGCGCCACGAGAAGCTGCACGAGACGAAGAATGCCAAATTATCATGCAAATTCTGCGATAAATTCTTTGTCACCAAGCCTCAAATGTCGGCGCATCTCATGAGAAATCATCAGTGTGGAAAATGCTGGGGATTCTTTAAGACCAGAGATGAACTGTTGAGGCATAAAGAAACCCATGCAGGTGAAGAAGAAGCCTCGGAAGAGCCAGATAATACCTGA
- Protein Sequence
- MPDVKLELFSVKQRVFLVKHFYQSFGDYKLVKSDYETFYGAPQFYQLTDEAIAELIELFEDTGSVLKSIRMMAQKVSGKEIPSLIPITSSKTEVGSEVSAEETEKSTTGHNDPLEDLDCFTKEEYEVQEADEVIHEEYLEEAAMKEKPSEKPPKQSVHSIRAQKIRVIRMNELLEETIEYTDDEDQLQEVESSIGEPEGIITCLKCDKKCKTLKEHKCFLLSCTYCRKKFPRKDLVKHMKRNHNNRKLHSCEFCGKFFIRKDDMLSHRRIHTKETPFTCRAQGCNAKFHWRAALNRHELLVHIKESTERYKCNFCPASYRLKEYVVSHMKRWHDYKETDSETVTEESCHKTWNGPETAQNSSLRPFICSFKGCGKSFCWRQSQKRHEQSHKEDNNDNRLKCEYCFYFSYSQKFLDKHMAKEHISPHQEISSLGTCDNCNENIPNGQTHCCDLVTCLHCREKFSKSEMTRHYQIKHAQEKQVCQVCGKRFHDLQAFLNHQKIHEDQQRLYVCSTCGKICQRKYDLQSHEKVHSQDRPYTCQIETCRRSFAWLHSLRRHEKLHETKNAKLSCKFCDKFFVTKPQMSAHLMRNHQCGKCWGFFKTRDELLRHKETHAGEEEASEEPDNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -