Parg005689.1
Basic Information
- Insect
- Phlebotomus argentipes
- Gene Symbol
- -
- Assembly
- GCA_947086385.1
- Location
- CAMTYR010000034.1:13600898-13603269[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.2e-05 0.00087 19.1 2.4 1 23 26 48 26 48 0.97 2 17 0.0031 0.12 12.4 2.9 1 23 54 76 54 76 0.96 3 17 0.00029 0.011 15.6 2.4 3 23 83 103 82 103 0.98 4 17 0.00035 0.014 15.3 0.2 1 23 143 165 143 165 0.94 5 17 2.7e-06 0.0001 22.0 1.1 1 23 171 193 171 193 0.98 6 17 0.00024 0.0095 15.9 3.4 1 23 199 222 199 222 0.97 7 17 0.0029 0.11 12.5 3.5 1 23 230 253 230 253 0.97 8 17 5.2 2e+02 2.2 3.3 2 23 297 318 296 318 0.95 9 17 0.016 0.62 10.1 3.5 1 23 350 372 350 372 0.98 10 17 0.025 0.98 9.5 5.9 1 23 394 416 394 416 0.96 11 17 0.00021 0.0083 16.0 0.1 1 23 422 444 422 444 0.98 12 17 0.0025 0.099 12.7 5.3 1 23 450 472 450 472 0.97 13 17 0.00022 0.0086 16.0 3.0 1 23 478 500 478 500 0.94 14 17 0.00045 0.017 15.0 1.2 2 23 631 652 630 652 0.98 15 17 8.4e-07 3.3e-05 23.6 0.6 1 23 658 680 658 680 0.98 16 17 0.00046 0.018 15.0 1.0 1 23 687 709 687 709 0.97 17 17 0.00029 0.011 15.6 4.0 1 23 715 737 715 737 0.98
Sequence Information
- Coding Sequence
- ATGTACATGAGCAAAGATTCTTTAGAATCCCCAGAAAATGTCCAAGCCACACAAACTAGAACCTCTTCTGACGACTTTTCATGTAGCATTTGCCGGAAAACCTTTAGAGCCAAGATCCAGCTGAAGCGCCACATGACAAACCATCAGCTGAAGAAGCCACACAGTTGCAAGGACTGCTCGAGCAGCTTCAATCATCTCGACAATCTTCTGCTGCACGTGGTGACGCACAAGAAGCCGCCTGTGGATTGTCCCAGATGCAAAGTGTCCTTCCACAGAAGCTCCAGTCTGCGCGGTCACATAAAGACGCACTTCAAGAGCGAACACTTCTTCTGCCACAAGTGTGATGACGTCTTCCTCCGCCGGGAAGACTTCCGGAAGCACTGTCAGCAGTGCTCAGGCAGAGACGAGACGCGGccggggaagagcttcatctgcgcgatatgctcgaagagttttgggaagaagagctcgctggacaggcacgcagtgattcacactggccagaagcccttcaagtgcgacgaatgcagtcgcggattcacgcagaaatcctcgctggaaatccacaagctcacgcactcgaacaccagggcgcatcagtgcCCGAAGTGTCCTCTCAGCTTTGTGCAGAAGGTAAACCTGAAGTGTCACTTGCGCCGCGTGCACTGCCCTGAGGATCAGGGCAGATTCCCGTGCAAGCAGTGCTCGTGCAGCTTTAAGAAGCTCAGCGCTCTCAGCTTGCACGTGAAGAAGACCCACCAAGAGCCAGACAAGTGCCAGCAGGAATCCGTCCAGGAGAAGTACGTGCAATTCACGGAGCATCGCGAGGACGGAACTGCAGTGCAGCACGCAATTAAGGAAGTTTTTGGACAGAAGGGAAGATTTCTGGTGTGCAATTTTTGCCCCAGAAGGCAGAGGAACTTCTCCAGCTGGCTGCAGCATAGAAAGCATCATGTGAGGGAAGCGCCGAGGGGAGTGTCGGAGGAATCGTCTTCTGAGTCTGAGGAAGAAGACGCCTTGCCTGAGGGCGACAGAAGAGAGAGAGTGTTCCAGTGCAGCAGATGTCCGGCGAACTTCCACATGAAGACGCAGTTCACGGTGCACCTGAGGCAGCACAACAGGGAAATGGCTCTGGAGAGGCGCTTGAGGGctgtgaacgagagcgccgtgcccaggccacacgcttgcagtgtctgtcccatgagattcatgaagaactgccatctgaaggagcacctgatgcgccatcagaacgtgcggcccttccagtgcgccacttgtggcaaaaccttcgccacacgcgcgatcctggaagttcacggacgcagtcacactggccagaggccgttctgctgctccaagtgcgacaagacgttcaccacagtctcagcctgccgacgacacatcgagatccacaatgtggacaagagttacgagtgcgcgaagtgtggcaggagattcaagacgcacGAATCCTTCAGGAAGCACTCTGTGATTCACGATGGCGCGATAGTGGAGCTGAGGAAGCACGTGGAGAGCGAAGAGGCACCAGAAGAGCCTCCGGAAATTCCCCAGACAACAGACAATCTGCCTGCCGTGGATTTCTCTGGCATGGAAGACAATCAGCCCAAGACCTTCATTGTCTACCTTGAGGATCACCAATTCGACCCAGTTGAGGAATATCTGCAGCCTCAACTCTCCCCGAATCTCATCAAGATCAATCCGATCGAGGGCGATGGCGAGAGCACCACAATCTTCTCCTGGACGCCGCAGAAGAGGCAGCAGAAAATGCCCGAAGAGGAAATAATTCTCCCTCCACTGGAGAACATTCCTCACACTCAACCTCCGGACGTCGTTCAGGAGAAGTCCAGAAGGGAGAAGAACTACAAGAagtgcacaaactgtccgaagaaattcctcaagcccatcgatttgaggcggcatctcaggattcacactggcgagcgtcctttcgagtgtgacgagtgcggaaagtccttctccttggagtccacgctcaagaaccaccgccaaatccactcagcctcgaagcccaagttcacctgtgtcacgtgcctgaaggacttctcctccagggacagcctgaagatgcacctgaccgtccacactggcgagaagcccttcgagtgtctctactgcgagaagcgcttccggacgctgagcaatcgcaacgcgcatcactcgacgcacCTTAAGAAGATCAACAGCACGATTCGGGCAGAGGCGGAAAAGTCGTCCCAGGAAGTGTTCCTGAGTCCTGATGATTTGCCACCGCTGGTGCCCATCCGGAAGTCCTAA
- Protein Sequence
- MYMSKDSLESPENVQATQTRTSSDDFSCSICRKTFRAKIQLKRHMTNHQLKKPHSCKDCSSSFNHLDNLLLHVVTHKKPPVDCPRCKVSFHRSSSLRGHIKTHFKSEHFFCHKCDDVFLRREDFRKHCQQCSGRDETRPGKSFICAICSKSFGKKSSLDRHAVIHTGQKPFKCDECSRGFTQKSSLEIHKLTHSNTRAHQCPKCPLSFVQKVNLKCHLRRVHCPEDQGRFPCKQCSCSFKKLSALSLHVKKTHQEPDKCQQESVQEKYVQFTEHREDGTAVQHAIKEVFGQKGRFLVCNFCPRRQRNFSSWLQHRKHHVREAPRGVSEESSSESEEEDALPEGDRRERVFQCSRCPANFHMKTQFTVHLRQHNREMALERRLRAVNESAVPRPHACSVCPMRFMKNCHLKEHLMRHQNVRPFQCATCGKTFATRAILEVHGRSHTGQRPFCCSKCDKTFTTVSACRRHIEIHNVDKSYECAKCGRRFKTHESFRKHSVIHDGAIVELRKHVESEEAPEEPPEIPQTTDNLPAVDFSGMEDNQPKTFIVYLEDHQFDPVEEYLQPQLSPNLIKINPIEGDGESTTIFSWTPQKRQQKMPEEEIILPPLENIPHTQPPDVVQEKSRREKNYKKCTNCPKKFLKPIDLRRHLRIHTGERPFECDECGKSFSLESTLKNHRQIHSASKPKFTCVTCLKDFSSRDSLKMHLTVHTGEKPFECLYCEKRFRTLSNRNAHHSTHLKKINSTIRAEAEKSSQEVFLSPDDLPPLVPIRKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -