Parg010653.1
Basic Information
- Insect
- Phlebotomus argentipes
- Gene Symbol
- ZNF341
- Assembly
- GCA_947086385.1
- Location
- CAMTYR010000025.1:5941050-5943423[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00024 0.0094 15.9 0.2 1 23 46 68 46 68 0.97 2 20 1.7e-06 6.7e-05 22.6 1.4 1 23 74 97 74 97 0.97 3 20 0.00012 0.0046 16.9 3.1 1 23 105 127 105 127 0.97 4 20 0.0013 0.052 13.5 3.4 2 23 134 155 133 155 0.96 5 20 3.1e-06 0.00012 21.8 0.2 1 23 161 183 161 183 0.97 6 20 0.11 4.1 7.5 0.2 3 23 190 211 188 211 0.94 7 20 0.00026 0.01 15.8 0.4 2 23 223 244 223 244 0.97 8 20 0.055 2.2 8.4 1.1 2 23 251 273 250 273 0.96 9 20 2.5e-07 9.7e-06 25.3 2.3 1 23 282 304 282 304 0.97 10 20 1.3e-06 5e-05 23.0 1.4 1 23 329 351 329 351 0.98 11 20 0.00021 0.0083 16.0 0.5 1 23 357 380 357 380 0.94 12 20 0.00091 0.035 14.1 1.1 1 23 393 415 393 415 0.98 13 20 0.001 0.039 13.9 4.8 2 23 422 443 422 443 0.97 14 20 2.5e-07 9.7e-06 25.3 1.9 1 23 449 471 449 471 0.98 15 20 0.0017 0.068 13.2 1.0 2 23 477 499 476 499 0.95 16 20 0.00015 0.0057 16.5 0.1 2 23 512 533 511 533 0.96 17 20 0.002 0.077 13.0 0.3 1 23 539 562 539 562 0.92 18 20 0.00046 0.018 15.0 1.4 2 23 592 613 592 613 0.97 19 20 0.00013 0.0052 16.7 0.8 1 23 620 642 620 642 0.97 20 20 9.1e-05 0.0035 17.2 2.3 3 23 653 673 651 674 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTGAAGGAAGAGAAGGACGATTTTCACCTAGATTACAGCATTGTCAAGGAAGAGTATGTCTTCCCGGAGGACGAATCCTCAGTCAAAGATGAGGAAGAAGGGCATCAGCAGAACTCACAAAAGCACATCTTTCCTTGCACAATTTGCGGAAAACTCCTGAAGACTCAACAATCCCTGAAAGGCCACATCGCCAGGCATGGCACAGACACCAAGTTTGAATGCGAACAATGCGGAAGAGCCTTCAACGACAAGCACGACATGAGGCGTCACATCCAGAGAATTCATTCCCAGCTTCCAGGGAAGCGCTTCTCTTGTCAGCACTGCGAGAAAGTCTTCTACAACAGGACTCTCTTCGAGCGACACGTGTCCGTGCACAGCCAAACGAAGGACATTGAGTGTTCGCTGTGTGCGAAGAAGTTCAAGCATGAGCGGAATCTGAGGGAGCATCTGCACGTGCACAGACAGGACAAGCCCTTCGTCTGTGGCGTGTGTGGCAAAGGATTCAAGAAGAAGTCCGCTCTCACTCAGCACGGCATCACGCATTTGGGGCGGAATGTCAACTGTTTCTACTGCAAGGCGCCGATGAGGAGCCAAGAGGGCTTGAGGAAACACATCACAGTTCTGCACAGGGGACTTCCGGTGGATCCTGATGATCCTCCAGTGTGCACAATCTGCAAAGAGGCTTTCCAGACACTGGAGGCGCTGAAGGATCACACCAGGAAGCATCCCAGTGAGGAGATGAGCAGATGTGAGATGTGTGAGAAGGAATTCCTCGACGAGAAGGCTGTTCAGAGACACATTCACACGTATCACGAGAAACAGTCGAACAAGAAAGCATTCTCCTGTTCACACTGTGATAAATCCTTCCCCAGGAATTACAATTTGCTCAGACACCTGGAGATTCACAAGAAGGACAGACCCTTGTTGTCGTGCAAACATCTGTGTGTTTATTCCATGGCGGAGGAAAGCAAGGGGCGCTATCcctgcaccatctgcgggaagttcttcaagacgccgccctgcctcaaggctcacgtgaagagacacagcgatgagaggaagttccagtgtgcgatttgccgcaaggacttcagagacaaaacaagcgtcCGGCGACATGTCCTGGAAGTTCACGAGGGCAAGAAGCCCAGCGAATTGTCCACAATCagctacaagtgtgcagagtgtgagaagatgttctggaacaagaccaagtacgagaggcacttgctgatgcacagcgacgtgaggaatgaagagtgtcctgtgtgctgcaagaagttcaagcacaagttctacctggagagacacatgctggtgcacaacacggcgaagccctacagctgcaagatctgcggcaagtccttcggcagggagtactatctcaagaagcacctgatgcgacacagagacaagacgctcaagtgcgcCTACTGCACTAGAACCTACAGGAATGACGATGGCTTCAGGAGTCACATGGACATGTTCCACAGAGGGCTTCCCGATGATCCCGGCTGTGATGTCATCTCGTGCACAATTTGCAGTGAGGTGTTTGAGGACTTTGAGAATCTGAAGAGTCACGTGCAGATTCATCCGCTGGAGAAGCCTTTCGAGTGTGCTGAGTGCGGAAAAACCTACATCAACAAGAGGCGAGTCAGGGATCACATCACCTTTGCCCATGTTGGCGAGAAGAAAATCTACAAGCGCACCAGAAAATCACCACAGAAGACTGCCAGACACGGTGTGAAGAAAGTAGAAACTGTGCCAAAGTGTACGATTTGCCTGAAGGTGTTCAAGGGCAGGAAATTCCTGAAGAATCACATGATTCTCCACGACAAGGATCGACCACTTTTCCCGTGCAAAATCTGCGGATTGCAGCTGAAGAGGAAATCTACACTGAGAGATCATGAGAAGAATCACGAGAAGAGCAAGGAAATCACCTACATAAATTGTCCAGGATGTTGGAAGACGTACATTAAGAAGAGATCCTTCAACAAACACATGGAGAGGCATCACAAGGATTTGCTGAAGAAATTAGATTGTCCAGATGACGAGGAAGTTCTGGAGAGTGTGATTGAGTGCTCTGAGACAATCAAGACAGAACCTGACTGGTCTTATGAGCTGATAAATTCCGAAGAAGATGTGTGA
- Protein Sequence
- MEVKEEKDDFHLDYSIVKEEYVFPEDESSVKDEEEGHQQNSQKHIFPCTICGKLLKTQQSLKGHIARHGTDTKFECEQCGRAFNDKHDMRRHIQRIHSQLPGKRFSCQHCEKVFYNRTLFERHVSVHSQTKDIECSLCAKKFKHERNLREHLHVHRQDKPFVCGVCGKGFKKKSALTQHGITHLGRNVNCFYCKAPMRSQEGLRKHITVLHRGLPVDPDDPPVCTICKEAFQTLEALKDHTRKHPSEEMSRCEMCEKEFLDEKAVQRHIHTYHEKQSNKKAFSCSHCDKSFPRNYNLLRHLEIHKKDRPLLSCKHLCVYSMAEESKGRYPCTICGKFFKTPPCLKAHVKRHSDERKFQCAICRKDFRDKTSVRRHVLEVHEGKKPSELSTISYKCAECEKMFWNKTKYERHLLMHSDVRNEECPVCCKKFKHKFYLERHMLVHNTAKPYSCKICGKSFGREYYLKKHLMRHRDKTLKCAYCTRTYRNDDGFRSHMDMFHRGLPDDPGCDVISCTICSEVFEDFENLKSHVQIHPLEKPFECAECGKTYINKRRVRDHITFAHVGEKKIYKRTRKSPQKTARHGVKKVETVPKCTICLKVFKGRKFLKNHMILHDKDRPLFPCKICGLQLKRKSTLRDHEKNHEKSKEITYINCPGCWKTYIKKRSFNKHMERHHKDLLKKLDCPDDEEVLESVIECSETIKTEPDWSYELINSEEDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -