Basic Information

Insect: Philotrypesis tridentata
Gene Symbol: ush
Assembly: GCA_018906965.1
Location: JACCIB010000016.1:3464797-3468451[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0081 1.3 10.7 0.4 3 21 183 201 181 206 0.91

2 8 4e-05 0.0063 17.9 1.3 1 23 243 265 243 265 0.98

3 8 0.091 14 7.4 1.6 3 20 315 332 314 334 0.93

4 8 0.014 2.2 9.9 4.4 2 21 561 580 560 581 0.94

5 8 0.064 10 7.8 0.0 3 20 608 625 606 627 0.91

6 8 0.016 2.5 9.8 0.0 2 23 666 687 665 687 0.95

7 8 0.0037 0.59 11.7 1.2 1 23 693 715 693 715 0.99

8 8 0.089 14 7.4 0.5 3 21 824 842 823 843 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0081	1.3	10.7	0.4	3	21	183	201	181	206	0.91
2	8	4e-05	0.0063	17.9	1.3	1	23	243	265	243	265	0.98
3	8	0.091	14	7.4	1.6	3	20	315	332	314	334	0.93
4	8	0.014	2.2	9.9	4.4	2	21	561	580	560	581	0.94
5	8	0.064	10	7.8	0.0	3	20	608	625	606	627	0.91
6	8	0.016	2.5	9.8	0.0	2	23	666	687	665	687	0.95
7	8	0.0037	0.59	11.7	1.2	1	23	693	715	693	715	0.99
8	8	0.089	14	7.4	0.5	3	21	824	842	823	843	0.92

Sequence Information

Coding Sequence: ATGGTGGTGCGCGAGGAGGAGAACAGCAGCGGCAGCGCCAGGGCGTCCTCGGCCTCGTCTTCCAGCAGCAACGCGGCAGCCTCCGCCGCCAGTGCAACCAACGGCAACGGCAGCCGCCGCAGTCGAAACGAGCTGGCGACAGCAGCAGCAGCAGCAGCATCGACGGCGACGTCGACGACGGGGGGGCCCCTGACGACTAGTCGAAGGGACTCGGAGGACTCGCGTAGGTCCTCGAACGACGAGGTGACGCTGCTCTCCGAGGCCAAGAGGCCGAAGCTCGAGGACGAGATCAGCGCAGCGGCCAGCGCACCCCGACTGAGACTGAACGCTAGTCTGGCGACGGACCCGGCACTCAGACCCCAGGCCGTCGCCGCTCTCACCATCAAACCCGAGAGCGCCGCTTCGCCCCCGAATCCCACGCCGCCGCTGCCCGCTGGTCTTCAGAATGCGATAGCGACGGGACGGCTGTTCGTCCTGCCGAACGACGGCAAGGACGGCCTGAACGTGGAGGCGGCGGTGACGGCGGGTCGGCCGGCGGCCCTCATCTGCCCGCCCTGCGGCATCCGGTTCAGCTCGGCGAGCACGCTCGACGCCCACCAGAAGTACTACTGCTCGCATCGGCCGCGGCTCGAGAGCGACGCCGAGAACAACGAGGACGACGAGGACAAGGCGAGCTCGACCGGGCCCAACAGCTCGAGCAGCGGCAAGTTCGAGTCGCGCAAGGCCTACGCCTGCCCCCACTGCTCCTACAGCGCCGACAAGAAGGTCTCGCTCAATCGCCACATGAGGATGCACGCCGCGTCGCCGGTCCAGCCGCCGCCGCAGCCGGCGCCGCCGCCGCCGCCGCTGCAGCAACCTCCGCAGCCGAGCCTACCCTCGGCGCAGGCTGCCTCGGCGCAGGTCGCCTCCAACGGCTCGCTCAACGAGGAGGCCGAGAGATACTGCCGGAACTGCGACATCAGGTTCAGCTCGCTCAAGACGTACCGAGCGCACAAGACGCACTACTGCAGCACGAGGCACGTGGTGAAGGACACGCCGCCCACGCCGGCGGCGAGCGCCTCCTCGCTCAAGGGCTCGCCGCCGACGAGCTCGAGCCCCGGGGACTCGCCGCCGCCTCTGGCCTGTCTCGCTCTCCCCACGAATCCCATCCTCATCGTGCCCTACTCGCTCGTCCGTGGCGCCTCGCTCCTCGCAGCTCCAGGTCTGCCCGCCTCCGATACCCCCTGCTTCCTCCTGCCGAACGGCACGCTCCAGCCGATGACTCGGGGTCTCACCGCGACGACGCCCACGCCCACGAGCATCGCCCCCGCGGTCGTCATGGAGGCGCCGACCATCACCTCGAGCGTTCTCCGGGCGGCGAACAAGCCCACCACCCCGCTGGCTCTGCCGCCCGCCGCTGCGCACTCGCCCAACTCGGCTGCCTCCGCTCCGCTCGACCTCAGCGTCAGGAGATCACCGGATCACGAAAAGGAGAATCGAGTCTCGCCGCTACCCTCGTCGCTGCCACCTCCGCCGAGCAGTCCGAGATCCAGGGGCAGCGTCAGCCCGCGCACGAGGTCCTTACCGACGGCGCAGGCACCGGATCGGATCCCGCCCACGCCGCCTACCGAACTGGCTCTCAGGCTAGCCGAACTGCCGCCTCCTCCCGTTCCCGGCGTTCTCGTCAAGCAAGGAGTCTCCAGATGCAAGGAGTGCAACATTGTCTTCTGCCGGCACGAAAACTTTGTCGCCCACAAAAAGCACTACTGCCAAGCTCGCGAAAGCAGCGTGACGAGCCCACCGCCGGCTGGCACTCCCTCGCCACCGCTCGTTCAACTCATCTGCGCTGCTTGCGGCATAAAGTTCGCTTCGATGGACAACCTCGTGGCCCATCAAGCCTTCTACTGTCCAAAGAGATCCGACTCTCAGGAGCATCATTCGCGGTGTCCGAAATGCAAGACGATGATCGAACCGGGCGTTTCGCACACGTGTACGAGCGGACAGACCGGTGGCTGGAGATGCCCGGTGTGCGGAGCGGTGAGTCCAACAGCCGGAGCAGCCCAGCGGCACATGGATGCGCATCAGGGTGTCAAGGCTTTTCGTTGCACGATTTGCCAATACAAGGGTAACACACTCAGAGGTATGAGGACCCACATCAGAATGCATTTCGAGAAGCGCGGAGCCGACCTCCAGGAGGAGAATTACATAACGTGCGTTTTGGAAAACGACGTGACGGCACCAACGCCAGAACCAGCCCCGGCCACCACACCCGAGGAGATACCTTCGGAAACTCAGCAGATCAACGGCAAGAGCGAGTCGCTCGTTCGTAAGAGCCCGCAACCCGTGCCACCCACGACGTCACCAGCAGCTTCGCCGTCGCCGGCAGCTCCATCGCCCGCAGCAGCGGCCAGTGGCAAAGTGAAACAAGAACGGGAGGACACGCCGCCTCCAGAGGAGAGTCTCGACGCGACCAAAGGTGGGCCGCGCTACTGTCGATCCTGCGATATCAGCTTCAACTATCTGAGTACCTTCATCGCTCATAAGAAGTTCTATTGCTCGAGCCACGCTGGCGAGGCGAGCAATAATAATAATAACAACAACGCGGCCTCGGTACCCTCGCCCGCCACCACTACTCCCCCTGCCAGTGGACGCACCGAGGCATCTGTACTTTAA
Protein Sequence: MVVREEENSSGSARASSASSSSSNAAASAASATNGNGSRRSRNELATAAAAAASTATSTTGGPLTTSRRDSEDSRRSSNDEVTLLSEAKRPKLEDEISAAASAPRLRLNASLATDPALRPQAVAALTIKPESAASPPNPTPPLPAGLQNAIATGRLFVLPNDGKDGLNVEAAVTAGRPAALICPPCGIRFSSASTLDAHQKYYCSHRPRLESDAENNEDDEDKASSTGPNSSSSGKFESRKAYACPHCSYSADKKVSLNRHMRMHAASPVQPPPQPAPPPPPLQQPPQPSLPSAQAASAQVASNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTPPTPAASASSLKGSPPTSSSPGDSPPPLACLALPTNPILIVPYSLVRGASLLAAPGLPASDTPCFLLPNGTLQPMTRGLTATTPTPTSIAPAVVMEAPTITSSVLRAANKPTTPLALPPAAAHSPNSAASAPLDLSVRRSPDHEKENRVSPLPSSLPPPPSSPRSRGSVSPRTRSLPTAQAPDRIPPTPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARESSVTSPPPAGTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKRSDSQEHHSRCPKCKTMIEPGVSHTCTSGQTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICQYKGNTLRGMRTHIRMHFEKRGADLQEENYITCVLENDVTAPTPEPAPATTPEEIPSETQQINGKSESLVRKSPQPVPPTTSPAASPSPAAPSPAAAASGKVKQEREDTPPPEESLDATKGGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNAASVPSPATTTPPASGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00144135; iTF_01274825; iTF_01036569; iTF_01037345; iTF_01035757; iTF_00286750; iTF_00287584;
90% Identity: iTF_01035757;
80% Identity: -