Ptri015258.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philotrypesis tridentata
Gene Symbol
-
Assembly
GCA_018906965.1
Location
JACCIB010000004.1:8107068-8110221[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.25 40 6.0 0.5 1 23 97 120 97 120 0.92
2 16 1.3 2.1e+02 3.7 0.1 1 23 179 202 179 202 0.91
3 16 0.03 4.8 8.9 2.3 2 23 274 296 274 296 0.96
4 16 0.22 35 6.2 1.0 1 20 327 346 327 350 0.94
5 16 0.41 65 5.3 0.2 2 23 377 399 377 399 0.93
6 16 6.8 1.1e+03 1.5 0.1 1 23 422 445 422 445 0.81
7 16 0.13 21 6.9 6.2 1 23 460 483 460 483 0.94
8 16 1.2 1.9e+02 3.8 1.3 1 23 493 516 493 516 0.94
9 16 0.00041 0.064 14.8 1.4 1 23 569 592 569 592 0.98
10 16 0.0044 0.69 11.5 1.7 1 23 610 633 610 633 0.96
11 16 4.1e-05 0.0065 17.9 1.5 1 23 639 662 639 662 0.95
12 16 0.00039 0.062 14.8 1.2 3 23 669 690 667 690 0.93
13 16 0.0057 0.9 11.1 0.8 1 23 695 718 695 718 0.97
14 16 8.5e-07 0.00014 23.2 0.3 2 23 725 746 725 746 0.97
15 16 8.3e-06 0.0013 20.1 0.4 1 23 752 774 752 774 0.98
16 16 0.00014 0.021 16.3 2.4 1 23 780 802 780 802 0.95

Sequence Information

Coding Sequence
ATGTGCGAATCGCTTCTTTTGCATTTGACGCTCGAGAGAAGTCCGCAGCAGTCGAGCCCGGGAAGCCTCCAGGAGGCGCAGAGAGCCGCGAGCGCGAGGCGCTTCGTTTTTCAGAAGAAGCTCGTGAAGATCGGCTCGATCGGCAAGCTCCTGTCCGTGGCGACGCCGATGGTCCAGGTGAAGATCGAGCCGTCCGAGCTGCCGAGCCCCGGCGACTTCGAGGAGGTCGCCATCGACGGGACCAGCCAGCAGAGCGTCTCGCCGTTCAAGAGCAAGGACATCGTGGTCTACATGTGCAAGTCCTGCAAGATGTACTTTCCTCTGCGGCAATCGCTCGAGATCCACAATGCCCGAGTCCACACGCCCCCGAAGAAGCCCGCGCCGATCGACGAGCTGCAGGCGAACGAGCCGAAGACTCCTCCGAAGAAGAAGCGGAGGCTCGCGGCTGCGCCGAGCGCCAAGTCCGGCGAGTCTCCCACCGAGAGCCAGGATAGGATTTACTTCACTGGCTATTACAAGAACTCGAACGGCAGCTACGTCTGCAGCTCCTGCGACTTCAGCTCGCGCGTTCGCGCGACCGTCGCCTCGCACGCCGCGCGCGAGCACGACGCCCTCGGCTTCGAGGACGAGGCCGAGAAGTCCAAGTCAGCTGCCGAGGCCGAGACTTCCGTCGAGAAGGAGGTGAAGGTCGAGGAGGAGGAGGAGGAGAAGGTGGACGACGACGAGAACAGCTGGCCGGTGGAGATGGTCGAGTACGTCGACGAGGAGGAAATCGAGGAGTTCGACAACTCGACCTCCCCGGCCGACAAGAAGAGCCGCAGCTGTCCCTACTGCTCGTACGTCTCGAACGTCCGCTCGACTTATCACTCGCACATCAAGCGAAAGCATCGCGAGCAGTGGCTCAAGAGCGTCGCCGAGAGGGTCGCCGCCCTCAAGAGCGCCCCGCTCTTCCGGGCCGACGACACCCCCGAGAAGTCCTTCACCTGCGCGCGCTGCCCCTTCAGGAGCTCCAATCGCTCCAGCATGCGCTCGCACGTCTGGCGCAAGCACGAGGCAGGGGACGATACCGTCGCCCCCGATCCCGAGTTCGAGGACATGCAGGCGCGCACCGAGGGCAAGAAGGTGCGCAAGTGCCCCTACTGCCCCTACGAGTCGTGGATCAACTCCACCCTGAACTCCCACATCAGCCGCAATCACGGCGACCAGCCCCATCCCCTCGCCGCCAAGTCCAAGCCTCAGCACAACGAGCAGGTGTACACCGGCTACGCGTGCGACTACTGCACCTTCGCCGCGGCCACCGTTCCCAGCATGCGCTCCCACTCGGCCAGGGAGCATCCCGGCAGGAAGCAGCCGCTCCAGCAGATCCCCGTCAACGAGTTCGACTGCGACCAGTGCGACTACAAGACCAAGACCCGCCGGCACATGCAGCTCCATCTCAAGGACTGCCACACGATGCTGGCCAACGAGGAGGGCATGTTCCAGTGCCACGCCTGCTCCTACGAGACCCTGTCCCGGATGGGCCTGCAGAGGCACATCTCCATCAAGCACGGCGCCATACCCAACAAGAGCGCCGAGGCCGAGCTCGCGCACATCAAGTGCGAGCTGTGCGACTACCGCACTCTCAACGGCAAGCTCCTCGACTGGCACAAGAAGCAGCACAGCTCCGCGGCCGGGGGCAAGGCCGACGAGAACGACGGCAACAGCTACGTCTGCAACGACTGCGACTTCTCCACCTGGACGAAGAGCCAGCTCTACCAGCACATCAGGCGGAAGCACAAGGACGGCGAGGGCAACGACCGCGAGCCCGAGCTCGAGGGCGAGCAGTGCTACGCCTGCGGCCAGTGCGACTACGTCACCAAGAACAAGCACGCGATGAAGACCCACGTGCTGAGGAAGCACACCGACGACTATCCCCACGAGTGCGACATCTGCGAGAAGAAGTACAAGGTCAAGGCCGACCTCACCAACCACATCAGGTTCCAGCACCGCGAGCAGCCCATCATCTGCGACGTCTGCGGCAAGACCTGCCGCAACAGCAACCTCCTCTACCTCCACCAAAAGTTCGCCCACTACAAGCCGGACTTCGAGTGCCACATCTGCCGCAGGCGCATGGTCAGCCAGGCCAACCTCGACGACCACATCCTCAAGCAGCACGAGCAGGTCGAGGCGGCCGTCTGCGAGGAGTGCGGCAAGACCTTCCGCAAGGCGGCCCGCCTCAAGATCCACATGCGCGTCCACACGGGCGTCAAGCCCTACAGCTGCAAGATCTGCGCCAAGTCGTTCGCCCGGCGCAACGGGCTCCGGCAGCACCTCCTCATACACAGCGGCAAGCGGCCCTACCTCTGCGACATCTGCGGCAAGAGCTTCACGCAGAAGACCGGCCTGATCTGCCACAGGAAGATGCATCCCGGCGACAAGCCGCCACTGCCCAGAGTCACCATCGAGCACGTCCTCACCGATCTGCTCAAAGAGTCATGA
Protein Sequence
MCESLLLHLTLERSPQQSSPGSLQEAQRAASARRFVFQKKLVKIGSIGKLLSVATPMVQVKIEPSELPSPGDFEEVAIDGTSQQSVSPFKSKDIVVYMCKSCKMYFPLRQSLEIHNARVHTPPKKPAPIDELQANEPKTPPKKKRRLAAAPSAKSGESPTESQDRIYFTGYYKNSNGSYVCSSCDFSSRVRATVASHAAREHDALGFEDEAEKSKSAAEAETSVEKEVKVEEEEEEKVDDDENSWPVEMVEYVDEEEIEEFDNSTSPADKKSRSCPYCSYVSNVRSTYHSHIKRKHREQWLKSVAERVAALKSAPLFRADDTPEKSFTCARCPFRSSNRSSMRSHVWRKHEAGDDTVAPDPEFEDMQARTEGKKVRKCPYCPYESWINSTLNSHISRNHGDQPHPLAAKSKPQHNEQVYTGYACDYCTFAAATVPSMRSHSAREHPGRKQPLQQIPVNEFDCDQCDYKTKTRRHMQLHLKDCHTMLANEEGMFQCHACSYETLSRMGLQRHISIKHGAIPNKSAEAELAHIKCELCDYRTLNGKLLDWHKKQHSSAAGGKADENDGNSYVCNDCDFSTWTKSQLYQHIRRKHKDGEGNDREPELEGEQCYACGQCDYVTKNKHAMKTHVLRKHTDDYPHECDICEKKYKVKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPDFECHICRRRMVSQANLDDHILKQHEQVEAAVCEECGKTFRKAARLKIHMRVHTGVKPYSCKICAKSFARRNGLRQHLLIHSGKRPYLCDICGKSFTQKTGLICHRKMHPGDKPPLPRVTIEHVLTDLLKES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-