Ptri018439.1
Basic Information
- Insect
- Philotrypesis tridentata
- Gene Symbol
- -
- Assembly
- GCA_018906965.1
- Location
- JACCIB010000017.1:2373769-2377052[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0016 0.25 12.9 1.2 1 23 247 269 247 269 0.94 2 11 2.1 3.2e+02 3.1 0.2 1 23 277 300 277 300 0.82 3 11 4.1e-05 0.0065 17.9 2.8 1 23 350 372 350 372 0.98 4 11 0.0001 0.016 16.6 0.4 2 23 457 478 456 478 0.97 5 11 0.007 1.1 10.9 3.2 1 23 483 506 483 506 0.96 6 11 1.9e-05 0.003 18.9 0.2 1 23 538 560 538 560 0.97 7 11 6.5e-07 0.0001 23.6 0.8 1 23 570 592 570 592 0.96 8 11 9.1e-07 0.00014 23.1 1.2 1 23 598 620 598 620 0.99 9 11 1.2e-05 0.0019 19.6 0.2 1 23 626 648 626 648 0.98 10 11 5.9e-06 0.00093 20.5 2.4 1 23 654 676 654 676 0.98 11 11 0.00095 0.15 13.6 0.4 1 21 682 702 682 703 0.94
Sequence Information
- Coding Sequence
- ATGGAGCAGGTCGAGATCTTCGGGACGAACCGGATCGACGACGCTCGCGGTGAGCTGAGCCTCCTGGTGAACCATCAGCCGGACGGGACCAGCGAGACCTGCCGGCTTTGCCTCGAGACCTGCACCTCTGCCGATCAACGATGGGCTCTTTTCCCTGGCGATATGCCACAAAAGCTCATGGCGTTCGCCGCTGTACAGATTCAAGAACACGATGGCTTACCTCGAATTATCTGTACAAATTGTCGTGATTTAGTGTACATGTCTTATAATTTCAAATGTCAAGTTGAAAAATGTGATCATTATCTTCGCCATACACTTCTTATAAAACAATCAACAAATCATTGGTCTGAAGCTATTAATACTATAGAGTCTTTGGTACCATGTGCTCAAAAAAATATAATTAATTCTTGCATGGTAACTCCAAATGAAGAAAGCAGCACGAATAACCAAGAGCAATTTATATTTGAAATAACAAATACATGTAATATGAGCAACAGTAACAATACGTTTCAACCTAATATCATAGTTGAAAGAAATAACATAGTATCTCAAGGAATAGATAATATCTCATCAGAGAGCCATAATACTGAAGGGATCAACATTACCTTTAAGGCACATTTTTCAGTGAAAGATGAGCAAAGTGATAAGAATAGTTTAATAAGAAAAGAATTGCTGACAAAGAAAGAGAATGGAAATCAAAGTGATGATGAAAAACCTTTAATATTGCGAACAAAGCGTCATAAATGCAAATATTGTATAAAATCATTTGCCAACCTAACATTGTTAGAAAAGCATGCAGTTATTCATAAAAAGCAATCTGAAACAATGTTTAATTGTTACATATGTGATGAACAGTTTTTATCAGTTGATAAAGTTCAAAGTCATGCATTGTCAATCCACAATATAGAAATGGATAAAGATAAAATTATAGATTGTAATAAACAAAGAAGAAAAGGTGACTTTAACAGTAGAAAAATTTGTGATGATAGTAATAGTAATGAATCAAATATATCATTAGACAATACTGAACATAAAAAATCGCGTCCATTCATGTGTAAAATGTGTCCTAAACAGTTTGCCTACCACAAAACTTTTATAGCTCACATTAGAACACATCCAAATTACAGTGACTATGCAAGGGATGAAGTAAACGAAATTCCAGAAACTATTTCCGAGATTGTTGATGAAGAAGTAGATTTACAATCGCAAAATCTAGAAAATAATTCACAAGTGAATCTTAATGATATTGAAAATTTTATGGATAGAAATAATATGTACATGTCCGAAGACGAAAATAATGATTTTGATGAAGATGACAGCAGTGATGATGATGGACCAAATGATGACAATATACCTGCATCAGGTATACAATGCAATCAGTGTGGTAAGCTTGTTGCCACAATGAGAAACCTTAAAAGACATCTTTTAACTCATTCGGGATTGAAATATAATTGTTCATTGTGTTGTAAAGATTTTTCAAGGCCAGACAAACTTAGAGAACATCAACAATTAAAACACAAAGAAGAGTTATTTGGAAAATCAGATTCTGATGATGAATCGATTGATGAAGACTTGCCTACTAGAAGAAAAAAGGATAAGAAAAATAGGCCTCATAAATGTCCAATGTGTCCAAAAGCTTTTGCTCAAGCTCAATCACTAGCTAATCATGAAGAAAGACACAAGCGTGTTCGAGATGTACAAAAACGCTATTTATGTGAAGTCTGTAGTAAATGTTTTGCTCAAAGTGGCTCATTAGTGGCACACATGCGCACTCACACAGGTGTAAAGCCATATGTTTGCAATGTATGTAACAGAGCCTTTACTAAAAGCACTTATCTTCAATTGCATCTCAGAACACATAGTGGAGAAAAACCATACATCTGTCAATATTGTAGCAGAGCTTTTGCTAGAGCTAATACTTTAGCAAGACATATAACTATGCATACAGGAGAAGCCAAATACCAATGTCAGATTTGTTCCAAATCTTTTCGTCGACTGACTTCTCTCAACGAACATACTTATACACATACAGGACAAAGACCTTATGCTTGTAAAATGTGTTCTAAAAGGTATAATAATGCTGGATCACTGTATGCCCATACAAAAAAATGCAAAGGTACACCCAGTACTAATTCAATATCCGAACAAGCTTGTACACAGCAAAATGATAATGACCCACCTCCACAATCTGATGCTGATGCTGCACATCAAGTTTTGATTTTTACAGAAAAAACATTAGATGAAACTGCAATTGATGATACAGTCACACCCGAATCATCTTGTCAATTTATGATTACAAATGTGCATGACCAAAAAGCAATGTCGACTAATATGCTTGAATCATTCTCTATTGAAGAGCCACATGTGTATGATTTGAATTCAAAGCAATTTAAAACACCTTTTTATGGATTATATCCAAGTATGTGA
- Protein Sequence
- MEQVEIFGTNRIDDARGELSLLVNHQPDGTSETCRLCLETCTSADQRWALFPGDMPQKLMAFAAVQIQEHDGLPRIICTNCRDLVYMSYNFKCQVEKCDHYLRHTLLIKQSTNHWSEAINTIESLVPCAQKNIINSCMVTPNEESSTNNQEQFIFEITNTCNMSNSNNTFQPNIIVERNNIVSQGIDNISSESHNTEGINITFKAHFSVKDEQSDKNSLIRKELLTKKENGNQSDDEKPLILRTKRHKCKYCIKSFANLTLLEKHAVIHKKQSETMFNCYICDEQFLSVDKVQSHALSIHNIEMDKDKIIDCNKQRRKGDFNSRKICDDSNSNESNISLDNTEHKKSRPFMCKMCPKQFAYHKTFIAHIRTHPNYSDYARDEVNEIPETISEIVDEEVDLQSQNLENNSQVNLNDIENFMDRNNMYMSEDENNDFDEDDSSDDDGPNDDNIPASGIQCNQCGKLVATMRNLKRHLLTHSGLKYNCSLCCKDFSRPDKLREHQQLKHKEELFGKSDSDDESIDEDLPTRRKKDKKNRPHKCPMCPKAFAQAQSLANHEERHKRVRDVQKRYLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCNRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYQCQICSKSFRRLTSLNEHTYTHTGQRPYACKMCSKRYNNAGSLYAHTKKCKGTPSTNSISEQACTQQNDNDPPPQSDADAAHQVLIFTEKTLDETAIDDTVTPESSCQFMITNVHDQKAMSTNMLESFSIEEPHVYDLNSKQFKTPFYGLYPSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -