Basic Information

Insect: Philotrypesis tridentata
Gene Symbol: PRDM5
Assembly: GCA_018906965.1
Location: JACCIB010000004.1:8095994-8101196[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0074 1.2 10.8 1.3 1 23 155 178 155 178 0.95

2 23 0.21 33 6.2 3.5 2 23 190 212 189 212 0.96

3 23 0.00048 0.076 14.5 0.0 1 23 257 280 257 280 0.96

4 23 0.16 25 6.6 3.6 1 19 292 310 292 311 0.97

5 23 1.1e-05 0.0017 19.7 1.7 1 23 325 347 325 347 0.97

6 23 0.0051 0.81 11.3 0.1 1 23 353 375 353 375 0.96

7 23 2.1e-05 0.0033 18.8 0.2 1 23 381 404 381 404 0.95

8 23 0.00078 0.12 13.9 0.5 1 23 600 623 600 623 0.96

9 23 7.7e-06 0.0012 20.2 1.0 1 23 629 651 629 651 0.98

10 23 0.0034 0.54 11.8 3.0 1 23 689 711 689 711 0.96

11 23 1.8e-05 0.0029 19.0 1.4 1 23 716 739 716 739 0.97

12 23 0.0072 1.1 10.8 1.1 1 23 745 767 745 767 0.97

13 23 0.0012 0.19 13.2 3.4 1 23 771 794 771 794 0.97

14 23 0.00088 0.14 13.7 0.8 3 23 802 822 801 822 0.99

15 23 0.00016 0.025 16.0 3.3 1 23 828 851 828 851 0.97

16 23 4.2e-05 0.0067 17.9 2.0 1 23 1151 1173 1151 1173 0.98

17 23 1 1.6e+02 4.1 1.5 1 23 1182 1205 1182 1205 0.89

18 23 4.6e-05 0.0072 17.7 3.7 1 23 1211 1233 1211 1233 0.98

19 23 3.4e-05 0.0054 18.1 1.5 1 23 1238 1261 1238 1261 0.96

20 23 0.0044 0.69 11.5 0.6 1 23 1267 1289 1267 1289 0.99

21 23 0.0016 0.25 12.9 1.6 1 23 1293 1316 1293 1316 0.97

22 23 0.0096 1.5 10.4 0.9 3 23 1324 1344 1323 1344 0.98

23 23 0.00015 0.024 16.1 1.2 1 23 1350 1373 1350 1373 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0074	1.2	10.8	1.3	1	23	155	178	155	178	0.95
2	23	0.21	33	6.2	3.5	2	23	190	212	189	212	0.96
3	23	0.00048	0.076	14.5	0.0	1	23	257	280	257	280	0.96
4	23	0.16	25	6.6	3.6	1	19	292	310	292	311	0.97
5	23	1.1e-05	0.0017	19.7	1.7	1	23	325	347	325	347	0.97
6	23	0.0051	0.81	11.3	0.1	1	23	353	375	353	375	0.96
7	23	2.1e-05	0.0033	18.8	0.2	1	23	381	404	381	404	0.95
8	23	0.00078	0.12	13.9	0.5	1	23	600	623	600	623	0.96
9	23	7.7e-06	0.0012	20.2	1.0	1	23	629	651	629	651	0.98
10	23	0.0034	0.54	11.8	3.0	1	23	689	711	689	711	0.96
11	23	1.8e-05	0.0029	19.0	1.4	1	23	716	739	716	739	0.97
12	23	0.0072	1.1	10.8	1.1	1	23	745	767	745	767	0.97
13	23	0.0012	0.19	13.2	3.4	1	23	771	794	771	794	0.97
14	23	0.00088	0.14	13.7	0.8	3	23	802	822	801	822	0.99
15	23	0.00016	0.025	16.0	3.3	1	23	828	851	828	851	0.97
16	23	4.2e-05	0.0067	17.9	2.0	1	23	1151	1173	1151	1173	0.98
17	23	1	1.6e+02	4.1	1.5	1	23	1182	1205	1182	1205	0.89
18	23	4.6e-05	0.0072	17.7	3.7	1	23	1211	1233	1211	1233	0.98
19	23	3.4e-05	0.0054	18.1	1.5	1	23	1238	1261	1238	1261	0.96
20	23	0.0044	0.69	11.5	0.6	1	23	1267	1289	1267	1289	0.99
21	23	0.0016	0.25	12.9	1.6	1	23	1293	1316	1293	1316	0.97
22	23	0.0096	1.5	10.4	0.9	3	23	1324	1344	1323	1344	0.98
23	23	0.00015	0.024	16.1	1.2	1	23	1350	1373	1350	1373	0.97

Sequence Information

Coding Sequence: ATGGAGCAGTTGGAGGCTGACCCGTCGTCGCAGCCGAAATGCCCCGAAACCGAGAGCCCAGCGGAACGTTTGGACACGACCGAGACGAGAAAAGACAGCAACGCGGAGAGTCTGCCCGAGATCATCCGCACCTTGGAGCTTCGGTCCAGGGATCCAAACGCATCGACCGCCGCAGAAAAGCCGATCAGTCCAGCGGTGAGCGACGAGTCGAAGCCTCTCCAGCCTGAAGATGCGGCGAGCACCGAGAACACCTACTTTCTGCGAGGCCTCCCTCCCAAATCGGCGTCCGCAGCCTCCGAGGACAACGCGGACCTCGTGTCCGACCTCAACTTCCACAAGCGCGTCTCCATCGGCAGCTACAGCTGCGAGCTCTGCAGCAGCTACAAGCGCATCGAGAACATCTGCAAGAGCAAGACGCAGATGTTCCGTCACCTACTCCGCGCTCACACGCAGTGCCAGGTGTACGAGTGCCCCTGCTGCCAGCTGAGCTTCAGCGAGCAGTCGGCTCTCGAGGATCACAAGCGGTTCGAGCACCTGAACTTCGAGAGGGCCAAGACGAAGTTCATGCAGTGCGACAGGTGCGAGCACAGGAGCAAGAACAAGAACCTGCTGAGGCTCCACCTGCTCAGGCGGCACGCCGTCCAGTACAAGTACGTGTGCAAGTGCTGCGCCAAGTGCTTCAAGACCTGGAAGATCAAGAACGAGCACGAGAAAGCCATGGAGCAGAAGAGCAAGAAGAAGTCGCCGAGGAAAGGCTACAGGCGAGAGTTCGTCTGCGACAAGTGCGACAAGATCCTCGCGCCGAAGGCCGAGCTCGTCAAGCACATGAAAGCCGTTCACTCGCTGGACTTCCAGAAACCAAGCAAGTCCCTGTACGAATGCACGCACTGCACCAAGTACTTCCTGTCTCGCAAGTCCTTGACGAAACACTCGCCGCTCTGTCACAAGCCCTTGGAAAACGATTCGACGGGCTTCTCGTGTCCCAACTGCGACAAGAGGCTGTCGAGCAAGGATCACCTGAAGAAGCACGCACTCGTTCACAGCGGCGAACGGCCGCACGTCTGTCCCGAATGCGGCCAAGCTTTCGCTCTGCTCAACACTATGAAGGTCCACGCGCTGTCGCATTACAATATCAAACCGTACTCGTGTGACATCTGCGGGCTTAGCTACTCCCAGAGGTCAGCGTTGATGACCCACTGGAAGGGCAAGCACAAGGAGCTACCGGCGCCTGGACCTGTCGAGATTCATCAGTTCTTTGATCACGAGGGCAAAGTTATAATTCCTTCATTTAACAAGTCTACTTCATGGAGTACGAACTATTTTTCTGTAAAGGCTGAAGACAAGAAGGAGAAGAAGGAATTGAATAAACTTAAAACACCCTCGAAGAGAAAAAGCTCGATACCTTTAAAAATTAGCAAGAGAAACGTCCTTATATCTGAGTCGAGCTCTGAATCTGATGCAGATTTTGACCCAGATTACGTTGCTTATTGCGATACCCGATCGAAGAAGACCTCTAAACGTGCAAAGGATAAGAAAGCATCAGCTAAAACACAGAAAACTAAAGCTGTTTCCCAGTCTAAGAATGAGTCGAAGAAAGCAAAAGAGAAATCTTCCATAAAAAAGTCTGAGTCTGAAAAAGCGAAGGAGAAAGCTTCTACAAAGAAGCTTGAATCTATAAAAGAAAACGAGAAAAATTCTCCAAAGGCAGAGGAGAAACCTCTTCGAAAGAAGTCCGACGAAACGAAGCAAAAAAATGCAGATCTTGATGATCGTTTTATTCGAACTGCAGAAAACACCTTTATCTGCAAGGCCTGCAACAAGGTATTTAAACAGTTGTCTGGTGTGAGAGGGCATATTCGAAATAAGCACCAACCGCGAGAGTATTTTAAATGCCCCCATTGCCCGAAGGTATACATGTCCAAGTATCCACTACAAACGCACATGATCATCCACTGCGAAAATAAAAACGACCTCATGTTCTTCTGTGATCAATGCCCCTATAGCTCAGTGTCAAAATACTGCCTCAAGTGTCATAAGCTTAGAAAACACACCGCAGACTGCCCATTCGAGTGTGATCACTGTAAAAAGCGTTTTAAAGGTAAGGCAGAACTTAAGTTTCATCTTGGAACGCACGGCGAATCTCAGCACATGTGTGATATTTGCGGTAAAATGTACACCAGTGAGGACTCGATGCTCAAGCATAGGCGGACAATTCATATCGTTCAGCGAAATTTCAAATGCCCGAAATGTTGGGTGAAGCTGCAAACTCAAGAGAGCTTGGAACATCATCTTGAACAGCACAACGTCACATACAACTGCGATATTTGCGATCTGAAGTTCAGCAAGAAGCATTATGTGATTCGGCATAAAAAACGTGTCCACTTGGTGGAAAAAAATAAGCTATGTCCAGTCTGCGGTAAGCGTTTTGTCTGCAACGCTTCTCTGAGAGTCCACTATTTGACGCATTCAAAAGTTAGGCCATATATGTGCAACGTTTGCGGCTGTAGTTTTACTCAGCGGTCGTCAATGATGCTTCATTGGAAGAAAAAACATCCGGATGCAGGGACACCACCGGCTCCAGTAATTCTCACAAACTTCTTTGATGAAATGAGCATCGAAGTAAAGAACCTTGTCGAGCCTACCATCGGGAAAGGACAACCTCGTTGGAACCGCAAACAGAGTATCATCTCCAGAGTACGCGAGCAATCGAGTTCTCAACTTGGCAAGTCGACCACTTCATCAATTTCACATAAAAATGATTCTTCCAATAAAGTTCAGACCAAGACTACGGCGAAACTCTCAGATAGACCTGTATCCAAGAGAAAAAGTTCAGTACCGCTGAAAGTCACCAGAAGAATTATCTCTGATTCTGATTCTGATTGGGAATACGAAAGGAAGAGAAAGTACTCCAAGGCTAAGAGTGCTAAAAAACCGTCAGCAAAGAGTACCAACCAGTCTAAAAAAGTGAAAAATGCATCAACTTCTGAAGAATTCAAGCCTAAAAAAACAAAGGTAAAAAAGATCAAAGACGAATCTTCCGATGAATTCACACCTGAAAAAGCCAAGGTAAAAAATATCGAAGACGAATCTTCCGATGAATTCACACCTAAAAAAGCCAAGGTAAAAAAGATCAAAGACGAATCTTCCGATGAATTCACACCTAAAAAAGCCAAGGTAAAAAAGATCAAAGACGAATCTTCCGATGAATTCACACCTAAAAAAGCCAAGGTAAAAAAGATCAAAGACTCTTCCAAAAAAATTGAACGTAAAAAGTCAAACGAGATAGCTTCTGAAAATTCGAATAAAGTGAAAGAAAAAAAGAAGGATGAAAACCCGAATTTTATAAAAACTAAAAATGGCGAATATCACTGCTGTAACTGCCCCGCAAAGTTCCAAGAACGCAGTAAAATTAAATTCCACGTTAAAAGTAAGCACCAACCTCGAGAGATCTTTACATGTCCATACTGTCCACAAACGTACATGTCGAAGTACCTGATGAAAACGCACATGAACAAACATGAACAGACAGACAGCAAATACGTGTTCCTTTGCTCTAAATGTGATTATAGAGGTATGTCCAAGCACGGTCTCAATGTTCACGAGGTTAGAAAACACTCCAATGAATACCAGTTTGAATGCGATCATTGCAAGAAACGATTCAAAGTAAAGACAGATCTTAAGTCCCATCTTGGAACTCACGGTGATTCCGAGCACATGTGCGATATTTGTGGTAAAATGTACACCAGCGTAGAGTCGCTATACAAGCACAGGCGGATGCTGCATATTGTTCAGAGAAATTTCAAATGTCCAAAGTGCTGGGTGAAAGTGCAAACTCAGGAGAGCTTGGATCATCATATTGCAACGCATAACATTATGTACAGTTGTGACGTGTGCGACCTCAAGTTTACTAAAAAATATTACGCCGCCAGACATAAAAAGCGAGTCCACTTGGTGGAGAAGAACAAGCTTTGTCCAGTATGCGGAAAGCGTTTCGCCTGCAATCCCACACTCAGAGTTCACTTCTTGACGCACTCCAAGGTGAAGCCGTACATGTGCAACGTTTGCGGCAGCAGCTTTACCCAGAGATCATCTATGATGTTGCACTGGAAGAAAAAACATCCGGATGCCGGTACGCCACCTCCCCCGGTCACACTCACAAACTTTTTTGATGCAATGGACAACGAAATACAAAGGCTCGTCGAACCCGTCCTTGGATCTTGA
Protein Sequence: MEQLEADPSSQPKCPETESPAERLDTTETRKDSNAESLPEIIRTLELRSRDPNASTAAEKPISPAVSDESKPLQPEDAASTENTYFLRGLPPKSASAASEDNADLVSDLNFHKRVSIGSYSCELCSSYKRIENICKSKTQMFRHLLRAHTQCQVYECPCCQLSFSEQSALEDHKRFEHLNFERAKTKFMQCDRCEHRSKNKNLLRLHLLRRHAVQYKYVCKCCAKCFKTWKIKNEHEKAMEQKSKKKSPRKGYRREFVCDKCDKILAPKAELVKHMKAVHSLDFQKPSKSLYECTHCTKYFLSRKSLTKHSPLCHKPLENDSTGFSCPNCDKRLSSKDHLKKHALVHSGERPHVCPECGQAFALLNTMKVHALSHYNIKPYSCDICGLSYSQRSALMTHWKGKHKELPAPGPVEIHQFFDHEGKVIIPSFNKSTSWSTNYFSVKAEDKKEKKELNKLKTPSKRKSSIPLKISKRNVLISESSSESDADFDPDYVAYCDTRSKKTSKRAKDKKASAKTQKTKAVSQSKNESKKAKEKSSIKKSESEKAKEKASTKKLESIKENEKNSPKAEEKPLRKKSDETKQKNADLDDRFIRTAENTFICKACNKVFKQLSGVRGHIRNKHQPREYFKCPHCPKVYMSKYPLQTHMIIHCENKNDLMFFCDQCPYSSVSKYCLKCHKLRKHTADCPFECDHCKKRFKGKAELKFHLGTHGESQHMCDICGKMYTSEDSMLKHRRTIHIVQRNFKCPKCWVKLQTQESLEHHLEQHNVTYNCDICDLKFSKKHYVIRHKKRVHLVEKNKLCPVCGKRFVCNASLRVHYLTHSKVRPYMCNVCGCSFTQRSSMMLHWKKKHPDAGTPPAPVILTNFFDEMSIEVKNLVEPTIGKGQPRWNRKQSIISRVREQSSSQLGKSTTSSISHKNDSSNKVQTKTTAKLSDRPVSKRKSSVPLKVTRRIISDSDSDWEYERKRKYSKAKSAKKPSAKSTNQSKKVKNASTSEEFKPKKTKVKKIKDESSDEFTPEKAKVKNIEDESSDEFTPKKAKVKKIKDESSDEFTPKKAKVKKIKDESSDEFTPKKAKVKKIKDSSKKIERKKSNEIASENSNKVKEKKKDENPNFIKTKNGEYHCCNCPAKFQERSKIKFHVKSKHQPREIFTCPYCPQTYMSKYLMKTHMNKHEQTDSKYVFLCSKCDYRGMSKHGLNVHEVRKHSNEYQFECDHCKKRFKVKTDLKSHLGTHGDSEHMCDICGKMYTSVESLYKHRRMLHIVQRNFKCPKCWVKVQTQESLDHHIATHNIMYSCDVCDLKFTKKYYAARHKKRVHLVEKNKLCPVCGKRFACNPTLRVHFLTHSKVKPYMCNVCGSSFTQRSSMMLHWKKKHPDAGTPPPPVTLTNFFDAMDNEIQRLVEPVLGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -