Basic Information

Insect: Philotrypesis tridentata
Gene Symbol: -
Assembly: GCA_018906965.1
Location: JACCIB010000004.1:8079402-8081841[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00067 0.11 14.1 0.3 3 23 41 61 39 61 0.96

2 18 0.063 9.9 7.9 0.0 1 23 66 89 66 89 0.94

3 18 2.2e-05 0.0034 18.8 0.8 2 23 95 116 94 116 0.96

4 18 0.0038 0.6 11.7 0.2 1 23 133 156 133 156 0.94

5 18 0.0037 0.58 11.7 1.3 2 23 168 189 167 189 0.96

6 18 0.65 1e+02 4.7 0.3 2 15 196 208 196 216 0.71

7 18 1.3e-05 0.0021 19.4 0.6 1 23 222 244 222 244 0.98

8 18 3.2e-06 0.0005 21.4 0.5 1 21 250 270 250 271 0.95

9 18 0.004 0.63 11.6 4.4 1 23 299 321 299 321 0.97

10 18 5.1e-06 0.0008 20.7 1.2 1 23 327 349 327 349 0.99

11 18 1e-07 1.6e-05 26.1 0.1 1 23 355 377 355 377 0.98

12 18 0.00016 0.025 16.0 1.1 2 23 384 406 384 406 0.96

13 18 3.9e-06 0.00062 21.1 1.4 1 23 411 433 411 433 0.97

14 18 0.0011 0.17 13.4 4.5 1 23 442 464 442 464 0.94

15 18 4.5e-06 0.00071 20.9 0.5 1 23 470 492 470 492 0.97

16 18 3.7e-05 0.0058 18.0 1.3 2 23 499 520 498 520 0.97

17 18 1.8e-06 0.00029 22.1 1.5 1 23 526 548 526 548 0.97

18 18 6.7e-06 0.0011 20.4 0.1 1 23 554 576 554 576 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00067	0.11	14.1	0.3	3	23	41	61	39	61	0.96
2	18	0.063	9.9	7.9	0.0	1	23	66	89	66	89	0.94
3	18	2.2e-05	0.0034	18.8	0.8	2	23	95	116	94	116	0.96
4	18	0.0038	0.6	11.7	0.2	1	23	133	156	133	156	0.94
5	18	0.0037	0.58	11.7	1.3	2	23	168	189	167	189	0.96
6	18	0.65	1e+02	4.7	0.3	2	15	196	208	196	216	0.71
7	18	1.3e-05	0.0021	19.4	0.6	1	23	222	244	222	244	0.98
8	18	3.2e-06	0.0005	21.4	0.5	1	21	250	270	250	271	0.95
9	18	0.004	0.63	11.6	4.4	1	23	299	321	299	321	0.97
10	18	5.1e-06	0.0008	20.7	1.2	1	23	327	349	327	349	0.99
11	18	1e-07	1.6e-05	26.1	0.1	1	23	355	377	355	377	0.98
12	18	0.00016	0.025	16.0	1.1	2	23	384	406	384	406	0.96
13	18	3.9e-06	0.00062	21.1	1.4	1	23	411	433	411	433	0.97
14	18	0.0011	0.17	13.4	4.5	1	23	442	464	442	464	0.94
15	18	4.5e-06	0.00071	20.9	0.5	1	23	470	492	470	492	0.97
16	18	3.7e-05	0.0058	18.0	1.3	2	23	499	520	498	520	0.97
17	18	1.8e-06	0.00029	22.1	1.5	1	23	526	548	526	548	0.97
18	18	6.7e-06	0.0011	20.4	0.1	1	23	554	576	554	576	0.98

Sequence Information

Coding Sequence: ATGCCGTTTTGTTTGTCAATCGAGAGATGTCAAGACGACCCTTTGCTATTCGCCGAGTCCAGCGGAAAATCCAATGGGACACCCCGTGGCTCGACTCGGAAACGACGGAAACAGCTCGACTGCACCTACTGCTCCAAGGTCTTCCTCAAGAGGGACGAGTTGGCTCTGCACTTGCGCGTCCACACGGACAAGAGCTACGTCTGCGACTTGTGCGGCCGACCGGAGATCTCCGCGGACACCCTGAACGACCACCTGGTCAAACAGCACGGCCAGACGAATCTCAAGTGTCCCCGTTGCGGCAGGTGCTTCGCCTCGCGTCGAGCCCTGCTCCTGCACGTCAGGGCCCACGAGGCGATCCCCCACAAAGCCCGGCGGAAGCCGTCCAAGCAGAAGAACTACGCGTGCCTGGCCTGCGACAGGAGCTACGAGTCCGAGGGCTACCTCAGGAATCACCTGGCCAAGAAGCACGCGGACGGTCCGCGGGAGCGGGAGGCGCGGCTGCGCTGCGAGCAGTGCGGCTTCGTCACCCCGCACCGGAGGTCCATGAAGAAGCACGTGCTGATCCACAGCGGCGAGAACCTCGCCACCTGCGAGTTCTGCGGCAAGAGGACGATCAGGTCCTACCTGCCGGAGCACGTGAGAATCCACACGGGCGAGAAGCCGTACGTCTGCTGCTACTGTGGGAAAGCGTTCGCCGGCAGGAAGTACCTGATCGTGCACGAGAGAATTCACACGGGGGAAAAGCCGTACCGCTGCCAGCTCTGCGACAGGTCGTTCACGCAGGAGTCGACGCTCAAGGCGCACGTCAAATCCATCCGGAAGGAGATCGACAGTGACAAAGAAGGGGAAAAGCTCGTCGACCGGGACAAACTCGACTCGGACGATCAGGAGGGCTACCAGTGCCAGTTCTGCTCCAAGTGCTTCAAATCCAAGAATCTCTACGACGGCCACCTCATCTCCCACAGCGACGCCCGGCCCTACAAGTGCGACATCTGCCTCAAGTCGTTCAAGCGCACCAACACCCTGGCCGTCCATCGGCGCATCCACACGCGCGAGCGCAACTTCGTCTGCGACGTCTGCGGCCGGGCCTTCGTCCAGGCGTCCCAGCTGGCGACGCATCAGCGCCGGCACTTCGAGCGCTACACCCGGCGCTGCGCCCTCTGCGACAAGGGCTTCTTCACCAACGCCGAGCTGCACAGCCACATGAACGTGAGGCACGGGGCTAACGAGCACGTCTGCGACGCCTGCGGCAAGTCCTTCCCGAACAATCACTCGCTGGCCAGGCACGCCAGGAGCCACGAGCCCGACTTCGAGCCCGCCAAGCACCAGTGCGAGTTCTGCGGTAAGACCTTCGCTTACAGGAACTCCCTGGTCGCGCACTGCAAGTCCCACACCGGCGACAACAAGTACGACTGCCACCTCTGCGGCAAGAGCGTCGCGTCCAAGGGCTCGCTCCAGGACCACCTGCGGCTGCACGGCGGCGAGAAGAGCCTCGTCTGCGACGTCTGCGGCAAGGCCTTCCACAAGAGGACGACCCTCGTCGTGCACAAGAGGACCCACACGGGGGAGAGGCCCTACGCCTGCGAGACCTGCGGCAAGGCGTTCACGCAGCACTCGACCCTCGTGATACACCGGCGATATCACACGGGTCAGAGACCCTATCAGTGCGGCGTCTGCAACAAGAGCTTCGTGTCGAAGGCGCTGCTCAACGGACACGCCAAGGTTCACGCGACCTCGTGA
Protein Sequence: MPFCLSIERCQDDPLLFAESSGKSNGTPRGSTRKRRKQLDCTYCSKVFLKRDELALHLRVHTDKSYVCDLCGRPEISADTLNDHLVKQHGQTNLKCPRCGRCFASRRALLLHVRAHEAIPHKARRKPSKQKNYACLACDRSYESEGYLRNHLAKKHADGPREREARLRCEQCGFVTPHRRSMKKHVLIHSGENLATCEFCGKRTIRSYLPEHVRIHTGEKPYVCCYCGKAFAGRKYLIVHERIHTGEKPYRCQLCDRSFTQESTLKAHVKSIRKEIDSDKEGEKLVDRDKLDSDDQEGYQCQFCSKCFKSKNLYDGHLISHSDARPYKCDICLKSFKRTNTLAVHRRIHTRERNFVCDVCGRAFVQASQLATHQRRHFERYTRRCALCDKGFFTNAELHSHMNVRHGANEHVCDACGKSFPNNHSLARHARSHEPDFEPAKHQCEFCGKTFAYRNSLVAHCKSHTGDNKYDCHLCGKSVASKGSLQDHLRLHGGEKSLVCDVCGKAFHKRTTLVVHKRTHTGERPYACETCGKAFTQHSTLVIHRRYHTGQRPYQCGVCNKSFVSKALLNGHAKVHATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -