Pcae028759.1
Basic Information
- Insect
- Philophylla caesio
- Gene Symbol
- topi
- Assembly
- GCA_963971545.1
- Location
- OZ020604.1:178655696-178658447[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.4e-05 0.015 18.0 2.6 1 23 274 296 274 296 0.97 2 10 0.29 1e+02 6.0 3.5 2 23 331 352 330 352 0.96 3 10 0.048 17 8.5 0.1 2 19 414 431 413 433 0.94 4 10 0.049 17 8.5 2.3 1 22 482 503 482 506 0.90 5 10 0.89 3.1e+02 4.5 0.2 2 21 521 540 520 543 0.79 6 10 1.4e-06 0.00049 22.8 2.3 1 23 563 585 563 585 0.95 7 10 0.0032 1.1 12.2 1.1 1 23 591 616 591 616 0.95 8 10 0.48 1.7e+02 5.3 1.7 1 23 622 644 622 644 0.88 9 10 4.1e-08 1.4e-05 27.6 0.4 1 23 650 672 650 672 0.99 10 10 0.046 16 8.5 1.4 3 23 680 701 678 701 0.95
Sequence Information
- Coding Sequence
- ATGATGAATCCGGTTGAAGAAGAATTTACAAACTCAGACGCATGGCTATCAGAGCAATTGTTTGCacagttaaaagaatttaattcaGACTTCAGAGATAAGCCCCTGGCGGATACACCGGCAACATTTGTATTTCCGTCTGGAAGTCTTAATTGCTTACCTGAGGAAGAGCCTCAAGACTTAACGAAAACAAGAATGGAAAATTTCGAATCAGTATTTAAGCTTTCTACACCTACGAGTATTCCTTCTTTCGATATGAATGATGTGCTCGATTTAAGTAATATTGCTAGTAGAGGCCCAGATGCCGCGTTAATAGATTTGGTTGGGACAGTACCATTGGCCCCGTTTACTCCATCAGCTATCGAAGCTCCTGTAATTGTTACTGAAGCGGCAAAGCAAGCAACGATTTCTTTCGATGCCACAGAAGAGGAATTGAAGCTTCTTAAATTTCTTGAGTCACAACCACAAAGCAATCAATTTGATACTAAACTTTATATGCCACCAGAAGTACCCTCAACAGCTTATCGTATTATAAAGTGTTCAAATTGTAACTGCCTCTTTGATATAATATCCTTCCAGTCTCATGTTTGTGATTACGATGAACATCACAATCTGATTATTCCGCCAACATCTTCTTCGACACCTATTAGCAAGCCAATTAAAGAAGAGCCTATTTTGCCTCCAGAGCCGGCATGCATTCGTCTGTTACGCGAAAATCAAATTCGGATTAGACGTTTTCTAAAAGATGAACTTAAATATGACGTAAACGCTTTAATTAACAACATAACAAGTAATTCTAATAACACTCAAGATGGTCCCCATGAGTGTACCTTGTGTGAGCGTAAATTTGTGCATGCTTCAGGTTTATTGCGTCATATGGAAAAACACGCAATGGACCTTATACCAACTCCAGGAAATCCCTCTGGTggtaaaacaacaacaacacaaggTAGTTCATTGCAAAGCGTTAATGGGCTTCGAGTTGTTGTTAAGTGTACTTTGTGCGGAcgtatattttttgaaactcaTGCTGCATTCAAGCATTTGTGTTCTCACTTTCCTGGAAGCACGCAAGAAGAAAAGGAATTCGATAATTGTGCCGAAATACCGTATGAGTCGTATGTGGACGAtgcaatgaattttttaaaagcggAGGCACAGAGTTGTTCAGGTACCTTTACTATTCACGAAGATAAACCTCCCGTGTATCTCAAAATGGTTATACTGAGCTGTATTTTGCAATGCGAGTTTTGCGATTTTGTCTTCTCAGAAGTATCTTACTTGTTTGTGCACTCCGCTTGTCATTTACCAGAACGTCGTTTTGAATGCTTTTCATGCGATATTCATATGCGCACATCAAAGGAGATTTGTGCGCATTGGCAAGCTGAATGCGTATTTATGAGGgaaaatttaaaagtacatCAAGCCACAACTCAACGCTATTTTGTTTGTAATGTCTGCGAGAATAAGTTTCAAACACTTGACCAGTTGCACGAGCATCGTTACACATCATATCATTTTTTCCCACGTCTGAACAAATTCCTCGGTGTATTACAGTTACCCTGTGAGTACTGTGATGTTGTGTTCGAATATGCACAAGAGTGTGTGGCTCACTATGAAGAAAAGCATTACAAAAAGTATAAGCGCGACAAAGATGGAACAGGTACTTCGTGTAAGACTCGTCAGTACTTGTGCGATATGTGCGGGAAGTCCTATACGCAATCAAGTCATTTATGGCAACATTTACGTTTTCATCAAGGAGTGAAGCCGTTTGCATGCAAAGAACCCGGTTGTACACGGAAATTTACAATTCGGCCAGATTTAAATGATCATATACGTAAATGTCATACCGGTGAACGGCCATATCATTGTTTGGTATGTGGTAAACGCTTCTTAACTGGTTCAGTTTTCTATCAACACCGTCTTATACATCGGGGCGAGCGTCGCTACGAATGCGAAGAGTGTGGTAAACGTTTTTATCGTGCAGATGCTCTTAAAAACCATCAGCGTATTCACACTGGTGAGAAACCGTTTGGTTGccttttttgtacaaaaaattttcGTCAGCGTGGTGATCGCGACAAGCATATAAGAGCTCGACATTCTCACTTGGATGCAAATGCACGTTTGATgatgcaaatgcaaaaacttcagtTAGAAGCATCCGCGGCAGCTGCTGCTGCTCAAGTTTCAGTACAACAACATCAAGTCAACAATACTACTTTGGTGAGCGGAATACCTACTGTAGCGCCACCCTTCTTTAGCATGCCATCTATTAACAATGATATGATTGATGGCCTTGAACCCTCAATAGATCCCAACGAAGTTGTTATGATTGGAAACGTGGCCTTTCCGAAGAGTATGTTTGAATCTATAATTCCTGATATAGACGAGGAATCAGCACTAAGGGCTATGGAACAGTTGCAATAG
- Protein Sequence
- MMNPVEEEFTNSDAWLSEQLFAQLKEFNSDFRDKPLADTPATFVFPSGSLNCLPEEEPQDLTKTRMENFESVFKLSTPTSIPSFDMNDVLDLSNIASRGPDAALIDLVGTVPLAPFTPSAIEAPVIVTEAAKQATISFDATEEELKLLKFLESQPQSNQFDTKLYMPPEVPSTAYRIIKCSNCNCLFDIISFQSHVCDYDEHHNLIIPPTSSSTPISKPIKEEPILPPEPACIRLLRENQIRIRRFLKDELKYDVNALINNITSNSNNTQDGPHECTLCERKFVHASGLLRHMEKHAMDLIPTPGNPSGGKTTTTQGSSLQSVNGLRVVVKCTLCGRIFFETHAAFKHLCSHFPGSTQEEKEFDNCAEIPYESYVDDAMNFLKAEAQSCSGTFTIHEDKPPVYLKMVILSCILQCEFCDFVFSEVSYLFVHSACHLPERRFECFSCDIHMRTSKEICAHWQAECVFMRENLKVHQATTQRYFVCNVCENKFQTLDQLHEHRYTSYHFFPRLNKFLGVLQLPCEYCDVVFEYAQECVAHYEEKHYKKYKRDKDGTGTSCKTRQYLCDMCGKSYTQSSHLWQHLRFHQGVKPFACKEPGCTRKFTIRPDLNDHIRKCHTGERPYHCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPFGCLFCTKNFRQRGDRDKHIRARHSHLDANARLMMQMQKLQLEASAAAAAAQVSVQQHQVNNTTLVSGIPTVAPPFFSMPSINNDMIDGLEPSIDPNEVVMIGNVAFPKSMFESIIPDIDEESALRAMEQLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00081676;
- 90% Identity
- -
- 80% Identity
- -