Basic Information

Insect: Philophylla caesio
Gene Symbol: -
Assembly: GCA_963971545.1
Location: OZ020608.1:103610378-103612501[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.66 2.3e+02 4.9 0.8 3 17 87 101 85 102 0.88

2 10 0.00061 0.21 14.5 0.4 2 23 285 307 284 307 0.96

3 10 6.3e-05 0.022 17.6 3.7 1 23 313 335 313 335 0.98

4 10 0.00024 0.084 15.7 5.8 2 23 342 364 341 364 0.94

5 10 0.57 2e+02 5.1 1.3 1 15 369 383 369 393 0.83

6 10 0.0044 1.5 11.8 6.6 1 23 398 420 398 420 0.99

7 10 4.5e-05 0.016 18.0 2.0 1 23 426 448 426 448 0.98

8 10 1.8e-06 0.00063 22.4 1.3 1 23 454 476 454 476 0.97

9 10 0.00066 0.23 14.3 0.6 1 23 486 508 486 508 0.97

10 10 0.026 8.9 9.3 4.2 2 23 535 556 534 557 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.66	2.3e+02	4.9	0.8	3	17	87	101	85	102	0.88
2	10	0.00061	0.21	14.5	0.4	2	23	285	307	284	307	0.96
3	10	6.3e-05	0.022	17.6	3.7	1	23	313	335	313	335	0.98
4	10	0.00024	0.084	15.7	5.8	2	23	342	364	341	364	0.94
5	10	0.57	2e+02	5.1	1.3	1	15	369	383	369	393	0.83
6	10	0.0044	1.5	11.8	6.6	1	23	398	420	398	420	0.99
7	10	4.5e-05	0.016	18.0	2.0	1	23	426	448	426	448	0.98
8	10	1.8e-06	0.00063	22.4	1.3	1	23	454	476	454	476	0.97
9	10	0.00066	0.23	14.3	0.6	1	23	486	508	486	508	0.97
10	10	0.026	8.9	9.3	4.2	2	23	535	556	534	557	0.94

Sequence Information

Coding Sequence: ATGTCTTTGACATTCTCGGATATTTGCAATGATCTGAAAACATTTTTGGAAAGTATTTGTCGCACATGCAGTCGAATAGATAATGGCGATGGACAATTGCAATTTAAACGCATATTCGACACTGCAGAAGACGCTGTATCTTCTTTCGCTGACGGTAGCAACGAATACCGTGCAAGTGATGAATTCAAGGATGTATATGAGGACATATTGCTTTGGAAACTTAATATAAAGCCAAACGATGGCTTACCACAACAAATATGTCATGATTGCTTTGAGCGCTTTAACAGCGTTAAACATTTCCGTAATCTCTGCCAAGATACACAAACATTATTGCAATCTTATATTAATCACGTGGACACGCTCTTAGAATCCGGAAGCTTGGGACGTTTGTCCCCTAGGGGGGGATCTACAAAAAGTGATTCGCGTACTTCGCCGGCACCTTCATTGTTTAATCCAGATGATTTGGTAGAAGAGTCCCCGGAAACACCCGAACGAGTAACATCGCAGCGAAATTCACCCCCTTTAAGTCCTAAGAGCCAGCTTTCGCAAAACAGTCCGCGTTACAACAAAGAAGTTGTGTATGCAGAGAGTTCTATGGGCACGCCACCGCCTCTATTCGACGAAATGAACACTGAGCCTATAGATATGGAGACGTTGGAGTTTTTAAAAGCAGGATCTGATCCAGAAATGAAACAAAGCTCAGTTCAAATTTCCGAACCGACATCTGATATTTTGCATCCATTAAACTTTATCAGTAGTAGTGAAGATGAAGATACTGATGTTGAAACTGAAAGCGATACAGAGGCAGATACAATGACACATAATGCAAATTATGTCACTCGACGATCTTTGCAGTGCAATATTTGTTATGCAACTTTCCCTCAGAGTTTTCTATTAAAAGAACACCGTTTGCGTTTACATCCACAAGAAAAGCCATTTGTGTGTAATATTTGCCCCAAAGAATTTAAGTCACATTTCCAGTTATCtcaacacaaaaacaaacacagtCGCCTTGATTCAATAAAATGCGAACAATGCGGTAAACATTTCCGAAGTCAACTTCATCTCCAACGGCACAACAAGAATTTCCATCTAACATCCACTTACACATGCCATATTTGCAAtgggaaatttgaaaattatacgCAAATGCGTTTCCAATATCATGTCCGGCAGCATGGCGAAAAACGTTTTCAATGCCAATTTTGCGAAAAGTCGTTTCATCAAAAAGTCCATCAAATTAATCATGAACGTACCCACACAAAGGAGCAACCGTTTCGATGTGATGTGTGCGGAAaagGTTTTCGTCAGCAAACCGCTTGCAGGGAACACATGTTAACACATAAGGATCCTACACCATTTAAATGCTCAATTTGTCAAAAAGGTTTTACCAATCGATCAAGTTTGCGTATGCACTTAGGTAGCCATAGTAAACCTAGCAACAAAAAACAGATTTTTACTTGCAATGTATGTGGACAAACTTTCTTAAATGAAACTCAATTCGAATGGCATCAACTGAATCATGAATCGTACACTAAGGAATCAAAAAATACATTTGGACTAGAAATACAACCTTCACATGGTCTAAcTCATAAAGGActgaattgtaaattttgtgaTAAATCGTTTTTGAAAAAGCAATCGCTTTTATTGCATGAACGGAAGCAtcatgcaaacatttttgaagaGAATAGAGATTTGGAGGGCGGGCTTCTTTATAAATCTCCTTTTGATGATCGCGTGCTAGGGACTCATGGCGACAACAATGATAAGgatatatttacattatttactacataa
Protein Sequence: MSLTFSDICNDLKTFLESICRTCSRIDNGDGQLQFKRIFDTAEDAVSSFADGSNEYRASDEFKDVYEDILLWKLNIKPNDGLPQQICHDCFERFNSVKHFRNLCQDTQTLLQSYINHVDTLLESGSLGRLSPRGGSTKSDSRTSPAPSLFNPDDLVEESPETPERVTSQRNSPPLSPKSQLSQNSPRYNKEVVYAESSMGTPPPLFDEMNTEPIDMETLEFLKAGSDPEMKQSSVQISEPTSDILHPLNFISSSEDEDTDVETESDTEADTMTHNANYVTRRSLQCNICYATFPQSFLLKEHRLRLHPQEKPFVCNICPKEFKSHFQLSQHKNKHSRLDSIKCEQCGKHFRSQLHLQRHNKNFHLTSTYTCHICNGKFENYTQMRFQYHVRQHGEKRFQCQFCEKSFHQKVHQINHERTHTKEQPFRCDVCGKGFRQQTACREHMLTHKDPTPFKCSICQKGFTNRSSLRMHLGSHSKPSNKKQIFTCNVCGQTFLNETQFEWHQLNHESYTKESKNTFGLEIQPSHGLTHKGLNCKFCDKSFLKKQSLLLHERKHHANIFEENRDLEGGLLYKSPFDDRVLGTHGDNNDKDIFTLFTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -