Pcae056603.1
Basic Information
- Insect
- Philophylla caesio
- Gene Symbol
- -
- Assembly
- GCA_963971545.1
- Location
- OZ020606.1:115518080-115521192[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.1 36 7.5 0.0 1 23 124 149 124 149 0.92 2 18 0.012 4.2 10.4 4.3 2 19 160 177 160 180 0.93 3 18 0.013 4.5 10.3 1.4 2 23 221 243 218 243 0.91 4 18 0.00013 0.046 16.5 0.6 3 23 251 271 249 271 0.96 5 18 0.11 38 7.4 2.8 1 20 277 296 277 300 0.91 6 18 0.002 0.7 12.8 0.4 1 23 305 327 305 327 0.97 7 18 3.8 1.3e+03 2.5 0.3 2 20 337 355 336 356 0.89 8 18 0.0015 0.54 13.2 0.9 1 23 376 400 376 400 0.91 9 18 1.1 3.9e+02 4.2 0.1 1 23 405 428 405 428 0.94 10 18 0.038 13 8.8 0.4 3 23 446 469 444 469 0.92 11 18 0.012 4.4 10.3 0.3 2 21 473 492 473 493 0.95 12 18 0.024 8.4 9.4 0.9 1 23 499 522 499 522 0.95 13 18 0.0086 3 10.8 0.2 3 23 529 550 528 550 0.94 14 18 0.15 51 6.9 0.6 2 23 554 576 553 576 0.94 15 18 0.22 76 6.4 3.9 1 23 582 605 582 605 0.87 16 18 0.00037 0.13 15.1 0.4 1 23 610 632 610 632 0.98 17 18 1.1e-05 0.0038 20.0 5.3 1 23 638 660 638 660 0.99 18 18 0.0022 0.76 12.7 0.1 1 23 666 694 666 694 0.92
Sequence Information
- Coding Sequence
- ATGCTAGAATATTTAAGCGACGATGATGGCAACTTCCAATTAACGGAAAACCAAGGAAGCGATGATGAGACGGTGCcaaattttgctttttccaATCTAAAAGGTAACTCAAAAAATAGTTGTACACGTGTTTGTATCCGTTCTCATAAAGTCTTTTGCACAGATGATCCTGATTTGCTGTGTGAATTCAACACTGACGATTCCGATACTGTCTCTATAAATGAGTACTTGAATGAAGCCATTACGagtaatttaaatacaatgGAATTTAAATGGCAAAGTGAATGCTTGATTTGTGCAGAGCACTTTGAGGAATATCAGGACTTACTACAGCATTGCAAAAGTTTGCACAAAAACGAATTTGACGAATATACATGCACGTTACAAGATTGTGATGTTGTAATACCAAATGAGGATTTACTCGCTCGGCACTTGGTATTGCGACACAGCGATTTGAATAGtattaaaatatatggCAGCTGCCCCCACTGCGGACTACGTTTCTCCAACTTTAATCAATTTAACAAACATTCCTGCTACAGCAAATTGACTCGAAAAGCATGCGAGCAGCCTTATTGTCAATATTGCAAAACGGAGTTTGTTTCACATAAAAGATTTCTATTCCATTTgcaatttcatttgtcaaagCGGCGTTGTAAAGTGTGTTTGATTTGCAACAAGGATTTTACAGATGTAGATAAGTTCTTCGTTCATGTGAATTACGAGCATGAGCCACTACAAACGTTAGCATGCACAATCTGTGATCGCATTTTTACAGAGAAGGAGACGTTTAGCAGGCACCAGCAATTGCACAAGGTCAAACCTAAGTATAAGTGTGATGAATGCAGCAGAACATATCATATTAAAAGATTGCTTTTGAAACATAaggtaGATTTTCATACCAAAATTGAGTATAAATGTGACTTATGCCCAAGAGTATTTCCCACTTTTTCCATCTTTCAAAACCACGTAAAATGGCATAATGCGGACGCCGAAGTTCGCGTGTGCATATGTACGAATTGTGGCTTGGTTGGATTTGATTACAAAAGTCTTGCgGAACACACTACCGACTCATACTCCGATTGCTTTGAATGCGAAATTGAAGAGAATATACTTATGGCAACCTACAAATGTCATTTCTGCGCACAAGATTTCAAAGATATCGACGCGCTTAGAAAACATCGTGCAACGGGTGTgcataaaaatggaaaatttatctGTCCCGTATGCAATGATGAACTTGCAGATAAGAAAGCGAAGCACATACACATGATGTCTGCACACAAAAGTTATAAAAGTTTATTAGAAACTTTGCCACTTAAGCGACTTTGGATGTGTGATGTGGGCGATTGTTTAGAATGTTATAGTGAATGGACAGCGTTGCAACGTCATAAGAGCCGTCTGCATAAATCAAATACATGTcagaaatgtaaacaaaaattaacgaatgCGGAAGAACTGGAAAGTCACATCAAGCTATGTGAAGCAAATGCATTTAATTGCCAATTCTGTGATCAAATATGTCCGACAAAAATGTCATTAGCAGTTCATGTCGCTAGAAGGCATAATCACAaaAATGTCTTTTGTCCGCACTGTTCCGCTGCTTATAAGAACGAACAGGCCTTAAAAGAGCATATCGACTACGCACATGTGCCTGTGCCTTGtacgaattgcgaaaaaatGATTAGCTGCAGACGATATTTAGAGGTACATATGCGAGCAGTGCACGATAATGAATGCCGATACTTTTGTGCGCATTGTAACAAAGGTTTCTTTCATCGCTCACAAAAAGAGTTGCACGAAGATAATGTACATCCGGACTCAGTTTACAAATGCGGCGAATGCAATTTTACAACAAGATATGCCAAGTCACTGGAAATTCACATTGCAAAACACTTGCAAAAGTCTGAATTCCAATGTCCACATTGTCCGAGAAAGTTTGGGCGTAAGCACACACTAAATATGCACATTAAACGGCATATAGATGATAAACCCTTCAGGTGTTCAGACACAATTGTTGGTGGTTGTGACGCCACATATATTACACGTAACCTTCTGAATAGACACATTCAAAGCAAACATTCTACACAATCACAAAAAACCAAAGAGTATAACGCCAACAATAAGCAGAAGAAGAGTAGCATTTCACAACCAAAATCTATAAGGAAAACAAGCATAAAGACGCAGGCAAGCCAGTTAGCTGAAGCTCTTGAATGCGAGAATGTCACAAATAATTTCATGAACTCGCTCAATTACACAAATGGTACACTTCTCGAATCGAAGGCAGCTAACAGCATTACTACAGTTGAAATTGCAGATGAGGCGACTTTTGTCGGTGTTGAAGATTTGCACAGCGCCAATGATGAGAATTATATGTTGCTACTAGTGGATGATGAAGAGATGCAAAtggtaaataatacaaatggtCATCTCATTATACTGGATGATGCGGAGAACGCTACAATttga
- Protein Sequence
- MLEYLSDDDGNFQLTENQGSDDETVPNFAFSNLKGNSKNSCTRVCIRSHKVFCTDDPDLLCEFNTDDSDTVSINEYLNEAITSNLNTMEFKWQSECLICAEHFEEYQDLLQHCKSLHKNEFDEYTCTLQDCDVVIPNEDLLARHLVLRHSDLNSIKIYGSCPHCGLRFSNFNQFNKHSCYSKLTRKACEQPYCQYCKTEFVSHKRFLFHLQFHLSKRRCKVCLICNKDFTDVDKFFVHVNYEHEPLQTLACTICDRIFTEKETFSRHQQLHKVKPKYKCDECSRTYHIKRLLLKHKVDFHTKIEYKCDLCPRVFPTFSIFQNHVKWHNADAEVRVCICTNCGLVGFDYKSLAEHTTDSYSDCFECEIEENILMATYKCHFCAQDFKDIDALRKHRATGVHKNGKFICPVCNDELADKKAKHIHMMSAHKSYKSLLETLPLKRLWMCDVGDCLECYSEWTALQRHKSRLHKSNTCQKCKQKLTNAEELESHIKLCEANAFNCQFCDQICPTKMSLAVHVARRHNHKNVFCPHCSAAYKNEQALKEHIDYAHVPVPCTNCEKMISCRRYLEVHMRAVHDNECRYFCAHCNKGFFHRSQKELHEDNVHPDSVYKCGECNFTTRYAKSLEIHIAKHLQKSEFQCPHCPRKFGRKHTLNMHIKRHIDDKPFRCSDTIVGGCDATYITRNLLNRHIQSKHSTQSQKTKEYNANNKQKKSSISQPKSIRKTSIKTQASQLAEALECENVTNNFMNSLNYTNGTLLESKAANSITTVEIADEATFVGVEDLHSANDENYMLLLVDDEEMQMVNNTNGHLIILDDAENATI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -