Basic Information

Insect: Philopedon plagiatum
Gene Symbol: R1A1-element\ORF2
Assembly: GCA_963971165.1
Location: OZ020195.1:61053905-61064572[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.017 3.2 10.7 3.8 1 23 1254 1276 1254 1276 0.98

2 15 0.27 53 6.9 4.8 1 23 1285 1307 1285 1307 0.98

3 15 4.4 8.6e+02 3.1 4.6 1 23 1316 1338 1316 1338 0.97

4 15 0.14 28 7.8 5.7 1 23 1347 1369 1347 1369 0.98

5 15 0.14 28 7.8 7.6 1 23 1378 1400 1378 1400 0.98

6 15 0.21 42 7.3 8.0 1 23 1409 1431 1409 1431 0.98

7 15 0.096 19 8.4 2.7 1 23 1440 1462 1440 1462 0.98

8 15 0.046 8.9 9.4 4.6 1 23 1471 1493 1471 1493 0.97

9 15 0.42 81 6.3 2.4 1 23 1502 1524 1502 1524 0.98

10 15 0.0057 1.1 12.2 2.1 1 23 1533 1555 1533 1555 0.97

11 15 0.027 5.2 10.1 6.8 1 23 1564 1586 1564 1586 0.98

12 15 0.014 2.8 11.0 2.7 1 23 1595 1617 1595 1617 0.98

13 15 0.036 7 9.7 3.5 1 23 1626 1648 1626 1648 0.98

14 15 0.035 6.8 9.7 9.3 1 23 1657 1679 1657 1679 0.98

15 15 1.9 3.7e+02 4.3 4.2 1 21 1688 1708 1688 1712 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.017	3.2	10.7	3.8	1	23	1254	1276	1254	1276	0.98
2	15	0.27	53	6.9	4.8	1	23	1285	1307	1285	1307	0.98
3	15	4.4	8.6e+02	3.1	4.6	1	23	1316	1338	1316	1338	0.97
4	15	0.14	28	7.8	5.7	1	23	1347	1369	1347	1369	0.98
5	15	0.14	28	7.8	7.6	1	23	1378	1400	1378	1400	0.98
6	15	0.21	42	7.3	8.0	1	23	1409	1431	1409	1431	0.98
7	15	0.096	19	8.4	2.7	1	23	1440	1462	1440	1462	0.98
8	15	0.046	8.9	9.4	4.6	1	23	1471	1493	1471	1493	0.97
9	15	0.42	81	6.3	2.4	1	23	1502	1524	1502	1524	0.98
10	15	0.0057	1.1	12.2	2.1	1	23	1533	1555	1533	1555	0.97
11	15	0.027	5.2	10.1	6.8	1	23	1564	1586	1564	1586	0.98
12	15	0.014	2.8	11.0	2.7	1	23	1595	1617	1595	1617	0.98
13	15	0.036	7	9.7	3.5	1	23	1626	1648	1626	1648	0.98
14	15	0.035	6.8	9.7	9.3	1	23	1657	1679	1657	1679	0.98
15	15	1.9	3.7e+02	4.3	4.2	1	21	1688	1708	1688	1712	0.91

Sequence Information

Coding Sequence: ATGGCCTACAGTTACGATGAAGAAAACAAGATCGGAATGTCCAACGAAATGGTCAACTCGATAGAGAATTCATTCACACTTTCTGCTTCTGAACAAGATACAAAACGGCAAAATAACCTCGTCTTACACACAGTTTTATATATAAAGGAAGATGATGAAAGCAGGGACTTTGAAAACAgcaagaatttaattttaaaagtagaACCAGTAGAAGATTTTAAGGTCGAAAATTTTCCATTTGATagtttcagaaatatttatcaaaatggTGATACCAAGCTAGAAGCTGAAGGAAAATCACAAATAGAAAGATTAAACATGCCTAAAAATATAATCTTTGATCATTCGCACTGTAGGGTTTTTGATGTAGACAAGGATAATCATGAGGAAATATCTTCAAACCAAACAACACCACAGAAAACAATTGCAAGTAGTGCAATGTGTGGCACACTCTTTGAAGAATGGGCAGGTAAAAATGAAGAAATTGATTTAAAGGAGGAGAATTTGGACTTTGATGAAGTCGGTAGTACAAGTAACCAGGATACTACTATTACTactcttattattattactactaTTTTACAGGGAAATACAGATAGGGGTAAAGGAGCAATGGATTTACTATACCAGTTTGTAAAAGAGCAGAAAGCAGATATGGTAATTATGGCGGAGCCCAACAAAAAGATGGTAACACAATCACAGTGGATAATAGACGCCAATACAGATGTCGCAATAAAGGTCATTAACAGAAACATCAAGGTGCTCAGAACGGGCAATGCCCCTGGAATAGTCTGGGTGGAAACTGAACTCTATGTAGTGTGTGGTTGTTATGTCTCCCCAAACGTGGATATAGAACATTTCACCGACTTTCTTACAGATCTAAGAAGAGAAATGAAAAGACACAAAAAAGAAATAGTAGTAGGGGGAGACTTCAATGCTAAGTCGTTTATGTGGGGTTCCAAGGTGGAAGATAAACGGGGAGAAATATTGACAGAATGGCTAGGAGAGGATGACCTGGTAATTCATAACGAAGGAACTGTACCGACGTTTGTGAGGGGGGATAGCAGATCATACCTTGATATAACGTTTAGTACCAGAAATATAGGCAAACAGATCGCACATTGGAGAGTCCTAGAGGAAGAGAACCTAAGTATCCACCAACACGTGTGCTTTGATATTCTAGCAAATAAACCACCACCAGAAGAGAGCAAGCTTAAAAATAAAGGGTGGATAgtaaacaaagaaaattttgacaAGCTGTCAAAAGAGTTTGAAAGACTTATCCAGGCAAAAAATGGCACCCTAGAAGCAAAAGAACTTACGGAAATGGCAACAAGAGCATGTAACATGACTCTGAAGCAGAAGTGTCACAAGGATAAGAGAAATCCGGTATACTGGTGGTGCGATGAAGTGGCGGATGCAAGAAAGAAATGCCTGGCGTGCAAGAGAACCCTGGCCAGAATAAACAAGAAAGACGAGGAACAACAAAAGGTAATCCGTAGGGAGCAATATAAAACTGCCAGAAATGAGCTGAAGAAAGCAATCATCACAGCTAAGAGGAAAGCATGGCAAACGGTCATAGAAGAAGTGGAACAAGACATCTGGGGCAAAGGATATAGAATTGTCACCGATAAGATTAAAAGGGCGCCCCCAACTGGCCTAGACGATCAGCAACAAATGAAGATGGCGAATGAATTATTCCCGAAGCACACGGTTGGAAAGTGGGACAGAGCACTAGTCGGGACGGCAGTCCCTCTCTTCACAAGGGGTGCACTGACTGAAGCCAGCAACAAAGTAAAAGAGAAAAAGGCTCCCGGGCCCGATAACCTACCTCCTGAGGTTATCAAGGAACTTGTCAAGAGACAACCGGACAAGATTCTGGAGACATTTAATGGGCTACTCGCAAAGGGAATATTCCCTAAGGAGTGGAAGGTGGCGAGACTGGTGCTGATCGAGAAAAGCAAGCCCGGTCAGAACAACAAGGCTTATCGGCCTATTTGCCTATTGAATGTGTTTGGAAAACTGTTGGAGCAGCTCTTGCTCGTAAGACTAAAGAGGGAAATCATAAGAACTGGAGACCTCGCAGACGAACAGTATGGATTTAGGGAAGGAAGGTCGACAATCCACGCACTACAAAGGGTAACCGATATTGCTGATGAAGCTAATGAAAGGGCGGGCAGAAAAAGATGCGCGCTGATTACCATAGACGTTCGGAATGCTTTTAACTCGGCTCCATGGCGCGGAATATTACAAGAATTGCGAAGAAGACAGATATCCCCCTATCTGTATAACATAATAGCCAGTTATCTGGAGGAGAGATGGCTCCTTGTGGGAGATGATGGGCGGATGGAAATGACGTGTGGTGTCCCCCAGGGGTCCGTACTAGGACCGACCTTATGGAATATATACTACGACGGTATATTAAGGCGCCCCGTACCCCGCGGGGTCAAATTAATTGGTTATGCGGACGACATCGGAATTGTCGTGGTGGAAAAAGATGAGGACAGAATAAAAAGCACTGCGAACAGAGCTCTCAGGGACATAACAGAATGGCTGAGGATAAAAGGACTGAGCTTAGCCCCTCAGAAGACGGAACTGGTTATACTGGCAGGAGGGAGAACTGTGAAGGAAATCGAGGCTGTGATCGAGGATGTGACCATCAAAAGCCGGGAATACATAAAGTACCTGGGCGTATACCTGGATAGAAACATGAGGATGGCTTATCACGTTAAAAGCATATCGGAAAGGGCAACCAAAGCCATCGGGAACCTGAGCAGAATAATGCCGAATGTTGGTGGACCCCGAGAGGGAAACAGGAGAATACTCCTGTCAGTAGTCCAGTCAATAATATTGTATGGGGCAAAAATATGGGGAAGAGCCATGAACAAGAAAATCCATAGAGACTCATTAATAAAGGTTCAAAGGAAAGCGGCAATAAGGGTTGTAAGCTCGTACAGGACCATATCCACAAAGGCACTCCTTGTCATTGCCAGGACTCCACCAATACGCCTGGCTGTGGATGAGAGATGCGCCGTGCAAGATGGAACAAACAAAAAAACTGCAAGAGAAATAACTCTACAGAGGTGGCAAGAAGAATGGCAGGAAGATACTGGCAAGGGCCTGTGGACCCGGAGGCTTATTCCAAATCTGGAACCATGGATAAATAGGGGGTGTGGGGAAGTGACCTATCACCTGACCCAGCTTCTCTCAGGACATGGGTGTTTCCAGTCTTACCGATACCGATTTAAACTAGCAGAAAGCGGGGAATGCCTATATTGCGAAATGGAGGATACAGCCGAACATACCTTCTTCGTATGCTGTAGATGGGAAAATGGAAGACAGGAGGTTGAGAACGAAATAGGACAAATTACTCCTGAAAATATAGTTGCAAAAATGGTGGAAAACGAAGGCAACTGGAATGCCATAAATAAGCTCGCTAAGCGTATAATAGACCAGAAAGAGAAAGATGTTAGACGGCAGGAAGGCAGTGTCTTGGGTGTCAGTAATCCAGAAAAACAAAAGTACAATGTGTGTTATAACCAAACAGACTGGAGAGAAAATTTACCGAAATAccgcttgaaacataaaaaccgcGAAGAGGCCAATTTCTTCGGATGTGACAAACGTGAATGTCAAACAGGTTATAGGAgtaatgtaataaaacaatTCTTAAAACACAAAATCCCCGAAAATGTTGATTTATTGAAATGTGACAAAATCCGTGAAGCGAACCTGAACAAACCCGAAGAGATTGATTTCTTTAGATGCAGTAAATGTGATTATCATTCACCTTATAAGAATTATTTGAAGGCTCATCTCTTGAAACACAAGAACCCCGAGGaagtagatttttttaaatgcgacCAGtgcccttttcaaacacgttataagcaGAGTTTCAGGAGACATTTCTTGAAACATAAGAGTCCTGAGGAGGTTGATTTCTTCAGATGTGATAAATGTAAATTTCAAACACTGTATAAGGGCCATTTAAAGGATCATCTCTTGAAACATAAGAGCCCTGAAGAGGTTGATTTCTTCAGGTGCGATAAATGTGAATTTCAAACACGGTATAAGAGTTGTTTAACGAGCCATCTCTTGAAACATAAGAGCCCTGAAGAGGTTGATTTCTTCAGATGTGACCAGTGTAAATATCAAACATGTTATAAGGGTCATTTAAAGAGCCATCTCTTAAAACATAAGAGCCCTGAAGAGGTTGATTTCTTCAAATGTACTAAATGTAAATTTCAGACACGTTATAAGAGGAATTTATGCAGTCATCTCTTGAAACATAAGAGCCCTGAAGAGGTTAATTCTTtcagatgtgacaaatgtggatATCAGACACGTTATAAGAGGATTTTAAAGAATCATTTATTGAAACATAAGAGTCCTGAAGAGATTGATTTCTTCAAATGTGGCAAATGCGaatatcaaacacgttataagaCTCATTTGAACAACCATCTCGTGAAACATAAGAGCCCTAAAGAAGTTAATTTCTTCAGATGTGACGCATGTGAATTTCAGACCCGTTATAAGAGGAATTTATACAGCCATCTCTTGAAACATGTAAGCCCTGAAGAGGTTGATTTCTtcagatgtgacaaatgtggatATCAGACACGTGATAGTAGGCTTTTAAAAAGCCATTCCTTGAAACATAATGGTTTTGAAGAGGTCGATATCTTCAAATGCGACAAGtgtgaatatcaaacacgttataagagTCATTTTAAGACTCATCTCTTAAAACATAAGAGCCCTGAAGAGGTTGATTCCTTCAGATGTAGCAAATGTGAATTTGAAACACGTTATAAGAGTTATTTAAAGATCCATGTCTTGAAACATAAGAGCCCTGAGGAGGTCAATATCTTCAGATGTGACAAGTGTGAATATCAAACTCgttataagaaatatttaacGAGCCATGTCCTAAAACATAAGAACCACGGGGAGATTGATTTCTTTAGATGTGACAAATGTAAATATCGAACATGTTATAAGAGCCATTTAAAGAGCCATCTCTTGAAACATAAGAGTCCCGAAGAGTTTGGTTTCTTCACATGTGATAAATGTGAATTTCAAACACGGTATAAGAATTATTTACAGATCCATCTCCATCTCTTCAAACATAGGAGCCCTGAAGAGCTTACTCAGATGTGA
Protein Sequence: MAYSYDEENKIGMSNEMVNSIENSFTLSASEQDTKRQNNLVLHTVLYIKEDDESRDFENSKNLILKVEPVEDFKVENFPFDSFRNIYQNGDTKLEAEGKSQIERLNMPKNIIFDHSHCRVFDVDKDNHEEISSNQTTPQKTIASSAMCGTLFEEWAGKNEEIDLKEENLDFDEVGSTSNQDTTITTLIIITTILQGNTDRGKGAMDLLYQFVKEQKADMVIMAEPNKKMVTQSQWIIDANTDVAIKVINRNIKVLRTGNAPGIVWVETELYVVCGCYVSPNVDIEHFTDFLTDLRREMKRHKKEIVVGGDFNAKSFMWGSKVEDKRGEILTEWLGEDDLVIHNEGTVPTFVRGDSRSYLDITFSTRNIGKQIAHWRVLEEENLSIHQHVCFDILANKPPPEESKLKNKGWIVNKENFDKLSKEFERLIQAKNGTLEAKELTEMATRACNMTLKQKCHKDKRNPVYWWCDEVADARKKCLACKRTLARINKKDEEQQKVIRREQYKTARNELKKAIITAKRKAWQTVIEEVEQDIWGKGYRIVTDKIKRAPPTGLDDQQQMKMANELFPKHTVGKWDRALVGTAVPLFTRGALTEASNKVKEKKAPGPDNLPPEVIKELVKRQPDKILETFNGLLAKGIFPKEWKVARLVLIEKSKPGQNNKAYRPICLLNVFGKLLEQLLLVRLKREIIRTGDLADEQYGFREGRSTIHALQRVTDIADEANERAGRKRCALITIDVRNAFNSAPWRGILQELRRRQISPYLYNIIASYLEERWLLVGDDGRMEMTCGVPQGSVLGPTLWNIYYDGILRRPVPRGVKLIGYADDIGIVVVEKDEDRIKSTANRALRDITEWLRIKGLSLAPQKTELVILAGGRTVKEIEAVIEDVTIKSREYIKYLGVYLDRNMRMAYHVKSISERATKAIGNLSRIMPNVGGPREGNRRILLSVVQSIILYGAKIWGRAMNKKIHRDSLIKVQRKAAIRVVSSYRTISTKALLVIARTPPIRLAVDERCAVQDGTNKKTAREITLQRWQEEWQEDTGKGLWTRRLIPNLEPWINRGCGEVTYHLTQLLSGHGCFQSYRYRFKLAESGECLYCEMEDTAEHTFFVCCRWENGRQEVENEIGQITPENIVAKMVENEGNWNAINKLAKRIIDQKEKDVRRQEGSVLGVSNPEKQKYNVCYNQTDWRENLPKYRLKHKNREEANFFGCDKRECQTGYRSNVIKQFLKHKIPENVDLLKCDKIREANLNKPEEIDFFRCSKCDYHSPYKNYLKAHLLKHKNPEEVDFFKCDQCPFQTRYKQSFRRHFLKHKSPEEVDFFRCDKCKFQTLYKGHLKDHLLKHKSPEEVDFFRCDKCEFQTRYKSCLTSHLLKHKSPEEVDFFRCDQCKYQTCYKGHLKSHLLKHKSPEEVDFFKCTKCKFQTRYKRNLCSHLLKHKSPEEVNSFRCDKCGYQTRYKRILKNHLLKHKSPEEIDFFKCGKCEYQTRYKTHLNNHLVKHKSPKEVNFFRCDACEFQTRYKRNLYSHLLKHVSPEEVDFFRCDKCGYQTRDSRLLKSHSLKHNGFEEVDIFKCDKCEYQTRYKSHFKTHLLKHKSPEEVDSFRCSKCEFETRYKSYLKIHVLKHKSPEEVNIFRCDKCEYQTRYKKYLTSHVLKHKNHGEIDFFRCDKCKYRTCYKSHLKSHLLKHKSPEEFGFFTCDKCEFQTRYKNYLQIHLHLFKHRSPEELTQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -