Ppla071730.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- Prdm15
- Assembly
- GCA_963971165.1
- Location
- OZ020194.1:70088177-70090816[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.43 83 6.3 5.8 2 23 249 270 248 271 0.95 2 12 0.061 12 9.0 0.4 3 23 387 407 385 407 0.96 3 12 0.0026 0.51 13.3 2.8 1 20 411 430 411 432 0.93 4 12 1.1e-05 0.0021 20.8 0.7 2 23 438 460 437 460 0.96 5 12 0.11 22 8.1 2.2 1 21 464 484 464 485 0.93 6 12 7e-05 0.014 18.2 2.8 1 23 495 517 495 517 0.98 7 12 0.56 1.1e+02 5.9 2.3 3 23 531 552 529 552 0.94 8 12 8.9e-06 0.0017 21.0 2.9 1 23 558 581 558 581 0.96 9 12 0.054 10 9.1 1.2 2 23 590 612 589 612 0.94 10 12 0.0088 1.7 11.6 2.9 5 23 620 639 617 639 0.95 11 12 0.0012 0.23 14.4 3.0 1 23 651 674 651 674 0.97 12 12 0.08 16 8.6 2.4 2 23 698 720 697 720 0.96
Sequence Information
- Coding Sequence
- ATGAAAGTATTTGAAGTCTCCAaatcagaaattaaagaaaaaataaaagatggATGTagaaaatgtggtatatgtgggGATCAACATTTTTATCGCGACTGTAAATATGTGACTGTTACCCGCaagataaagaataaagaagtTCCGACAAGAGCCAGGCTGTCTTTACCAAATATgttggaaattaaaaaatttgcagaTGAGTCGAGCTCAGTTTTTACTAGGTCTTTGGTTGAAGTTGGCACTGAATTTGGACCGTTTATTGCTAAAAAAAACTTGACTTTAAACCCCTTAACCACTTTTccgattaaaatttttattgagaACGAGTCAGATCTTTCAGAATACTATTTAGATACTACAGATGAAAATGAATGTTGTTGGATGATGTTTGTTAATCCTGCTAATGATGTTGaagaacaaaatttaatttgttaccAAGAAggtgaaaacatattttttggctctaTAATGGATATAAATCCAGGAGAAGAATTAAGGGTGTGGTATTCACCACACTATGCTTTTAAAATGCAGAAAAGTACTTTGAGCTTTAAAGAATCGTCAAACTTGCAGATGGAGATAAATAGAAATGGGACTGATGACTTAAATACCCTTATAAAGCAGCAACAAAAAATTGTACCCAGAGTGATTTGGAATTGTAAATTTTGTTATAAGTTAGAGGAAAATGTCACTGATTTTGCTAGGCATCTTATGTCCCATTATAGTTTACAAAAACGGAAACGGTGTGAACATTGTGCCCAACGATTTCGGTACACACAGGATTATCGACAGCATGTAAAGCTTCATCATAATGACAGTTTAGACATAAAGGATATACCTGCGAAATATCTCCATGTTAAAAACAAAGTAgataaacatttaacaaataaatccCCTATAGTTTTAAAAAGCAACACAATCGGCGGACCTCTGTTACTACAATTTTTAAGTGATAGTTTAGATAACTCAAATTTGCTTATGCAGCAACCAGAAGTTAATTCATTGGAAATAGAAAATTATGAAAACCAAAACATACTTTTAGATAGtgaaaatttacatttaaatgttGATGTTATTGGAAATCATAGTATAAAGGATTTAGAGGATTCCAGTTCTGAGATGAAAACAAAAGAACTTGAAGCACAAGAAATTATCTGCGACATATgtttaagaaaatttcgcagTTTAAAAGCAATCTCTACCCATCTAAAACTTCACATTggagaatatttttgttcttcTTGCAAAAAGGTTTTTGGTCGACCAGAAAACCTAAAACAGCACAAATGTAACCAGATATTCTCTTTAAAGTGTCCCAAATGTGAGAAAATTTTTTACCAGAAGAAATATTTGGCCAAGCACATGTCAGTGGTTCACGATAAGAAATATACCTGCAtagtttgtaaaaaattttattattcttccACTGAACTTAGAAATCACATTTGCCAGAAAGTTCCCAAAGGAAAAATGTGCGAGTTTATGTGCAAATTATgctcaaaaaaattttcaaaggaAATATACTTAAAGAAACATCTACGCATACATTCTACAGTTAAAGACAAAGAACAAACTGTAAAGCAAATTTGCTCAAAATgctgttatatattttattctaaacGCTCTTACGAAAGACATTTAATTTCTGTCCATAATAAGTCTCGAGATTATGAATGTCACATTTGTGATAAGAGATTTTCTAGAAAAGATGTACTTCATTCCCATATGATAAATGTTCATATGTTGAcaccagaaaaaataaataaatgtatgcAGTGCAATAAAGAATTTAAGTCGGAGAGGTCCTTGACGTTTCACGTAAAAGTTGCACACAGTAATTCACAATATAGATGTCATTGTGGTGCTGTATTCAAATATTCGCGGAATTTATTACGTCACAGAAATAAGCTTCATAAAACTGACACAGATATTTTATCTGAAGATATGCATCAGTGTCCAATATGTACCACCAAAGTAAAGTTAAAGAGATCCCTTCAGCGTCATATAAGACAAAAGCATCCAGACGAATATAAGAATATATGTGTAGAAATAAATGCgaagaaagaagaaaagaaaaaattaatttcgagaTGCCCAATTTGTCACCATGCAGTCAAATCTGTGCTGTCTTTAAAGACCCATATACTAAAAAAACATCCAAAAGACTACCGATATATATGTACAGACTTAAATATTACTAAGGATGCAttggaaaaacagaaaaaggaTACCAAATTATTTGATGACGACTTTGACAATTTTATTGATACTGATCAGAAATGTATGGATTtgcaaaaaacaattgaaaacaTGGATTTCAGTATTGATGCCTGTAATGACAATTTATTAAGTGGATCTGAAACCATTgacaagtttttaaaagaaagcAGCGAACAAATATCTATTTTATTTACTGATAGTCCAAAAGTCCCTACTGTAAATGATTTTGGAACTACTGTCATAACTGATAGAATCAGTAACAGAGAGGTGTGTCTTTCAATGCCAGATATTTCAGAAATAGACCAGGAAATAAAACTCAGTAAAACCTCATTCATTTCAGACACTGGTAACATTGTTGAAACTCAAGAGGATCTTACTAATATTGTGGTGTATGTTgtaaaagaaaaaaccttgTAA
- Protein Sequence
- MKVFEVSKSEIKEKIKDGCRKCGICGDQHFYRDCKYVTVTRKIKNKEVPTRARLSLPNMLEIKKFADESSSVFTRSLVEVGTEFGPFIAKKNLTLNPLTTFPIKIFIENESDLSEYYLDTTDENECCWMMFVNPANDVEEQNLICYQEGENIFFGSIMDINPGEELRVWYSPHYAFKMQKSTLSFKESSNLQMEINRNGTDDLNTLIKQQQKIVPRVIWNCKFCYKLEENVTDFARHLMSHYSLQKRKRCEHCAQRFRYTQDYRQHVKLHHNDSLDIKDIPAKYLHVKNKVDKHLTNKSPIVLKSNTIGGPLLLQFLSDSLDNSNLLMQQPEVNSLEIENYENQNILLDSENLHLNVDVIGNHSIKDLEDSSSEMKTKELEAQEIICDICLRKFRSLKAISTHLKLHIGEYFCSSCKKVFGRPENLKQHKCNQIFSLKCPKCEKIFYQKKYLAKHMSVVHDKKYTCIVCKKFYYSSTELRNHICQKVPKGKMCEFMCKLCSKKFSKEIYLKKHLRIHSTVKDKEQTVKQICSKCCYIFYSKRSYERHLISVHNKSRDYECHICDKRFSRKDVLHSHMINVHMLTPEKINKCMQCNKEFKSERSLTFHVKVAHSNSQYRCHCGAVFKYSRNLLRHRNKLHKTDTDILSEDMHQCPICTTKVKLKRSLQRHIRQKHPDEYKNICVEINAKKEEKKKLISRCPICHHAVKSVLSLKTHILKKHPKDYRYICTDLNITKDALEKQKKDTKLFDDDFDNFIDTDQKCMDLQKTIENMDFSIDACNDNLLSGSETIDKFLKESSEQISILFTDSPKVPTVNDFGTTVITDRISNREVCLSMPDISEIDQEIKLSKTSFISDTGNIVETQEDLTNIVVYVVKEKTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -