Ppla081586.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020195.1:97422943-97435054[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0017 0.33 13.9 0.8 1 23 208 231 208 231 0.96 2 10 0.003 0.59 13.1 1.9 1 23 236 258 236 258 0.97 3 10 5e-06 0.00097 21.8 0.3 1 23 264 286 264 286 0.98 4 10 0.068 13 8.8 1.5 1 23 292 314 292 314 0.95 5 10 6.1e-06 0.0012 21.6 0.4 1 23 320 343 320 343 0.97 6 10 5.8e-05 0.011 18.5 2.9 1 23 349 371 349 371 0.98 7 10 4e-05 0.0078 19.0 4.5 1 23 377 399 377 399 0.98 8 10 5.3e-05 0.01 18.6 1.4 1 23 415 437 415 437 0.95 9 10 0.0017 0.33 13.9 0.3 2 23 443 464 442 464 0.97 10 10 4.4e-05 0.0086 18.9 0.3 1 23 470 492 470 492 0.97
Sequence Information
- Coding Sequence
- atggaagAGAGAAGAATTATGTTACGAGATATGAAAATATGCAGGTTCTGCTTTCACACTAATGAAAATGATCTAACCAGTATTTATCAGAAAGAAGTAAAAGCCGTCCCTCTGCCTGTGCAGATTATGAGCTGTGTTTCAATCGAGgtattTCCCAATGATGGTTTTCCGCAGCAGATTTGCAACATATGCAGGCAACAAACAAACCAATCTTATATTTTTAAGAGCAACTGCAAAAAGGCAGATGATGCCCTCAAGAATTTCCTTCAATCTGGAGAACTCATCGATCTAGAAATTGTAAAATCGTCTCTTTCCAATCTTAAAAGGCATCCGGCCTCTAAAGTAATAACTCCCATTAAAGATGTCCGAATTGTAGCAAATAAGTCGCCTTCATTGGAAagcccaaaaataaaaaggacaAAATTGGATGATGGAACAGAAGTGGTCACTTTGTCTGTTCCACAGCCTGAGAGTACCGAGAGTCAAGATgaaTCCAGTCAAGATTCTATAGAAGAATCTTTAAACACCAATGCTGAACATGCAGAGGAAACTTATAATGCAAATAGATTTGATGATCCATTGCATATACCTGAAATACCTGAACAgGTGCAAACAGACATTTTTTCATGTCAGTATTGCGAGAGGTCATTTCCACTGAAACAACTTCTGGAGTTGCATGTGACAACTCGTCACCGAGAAAGACAGTTTGCTTGTGCACAATGCGATAACAAGTTTTTCACCAAATACGACATGATGAAACACCAGTCGACCCACAGCGAGCACAAGCCTTTCAGCTGCAGCGTGTGCGGCAAAGATTTCGCACGCGAGGCCCTGTTGAGGCGCCACGAACAGACGCACAACGAAGCGCCCAAATATCTGTGCTTACACTGCGATAGGACGTTCCTCGTCAAGGACGACCTGGACAATCACGCGAAGAAGCACGACAAGAAGAGGCCTTTCGTGTGCGAGACGTGTGACAAGAGCTTTGTGTTCAAACAGGGTCTGGAGCGGCACATAAATTCGGTGCACGCTCAAGATCGGCCACATAAATGTAATTATTGCGATGCCAGCTTCAACTCTCAGATTCGCCTCACCAGACACATCACGACGCACGCGGGTCTGCGACCTTATCCTTGCAAGATTTGCGGTAGAACGTTCCTTTTGAGCCACCACTTGACCAGACATATGCGCAGCCATTACGCGGCCGATCAGGGCCGACAGCCCGAGGAGGCCGTAGGGCAGCACAAGTGCGACATCTGCAGCATGTCCTTCAAGAGGAAGGACAGTCTCATTAATCACAGTGCCATTCACAGCATGGTCAATTTAAGATGCGTCATTTGTAACACTTCCTTCGAAAATGCCAAAATGGTCAAGGAGCACATCACTACCCACCTGCAGGGACTCTCGTATCCCTGCGACAGATGCGACTACAGTTTCGAAACTCAAGATCAGCTGGAAGAGCACGAACTGAAACACGCCGAGATGGAATACGAGGAGCAGATCGAACAGGAGGTTATTTCCGAAGTAAATCAAATTAGAAACCAGATGAGTGCAGAATCGAACACTGATGATGAAAGATTCGTTGAAAATGGCGAAGTAATAAACTATCGCATATCGGACATTCCCGACCCGACGACGACGATAATTCCCCGCTCGGCTGCCTCTCCTCCTTTTTCCAAAAGCAGCAGCACGTCCCCTCCGGACTTCGGACGGTCGCCGCCGGCACCGGAAACGACCGATGGACTTAATCAGTTCTTCAAAACGGAAATCAGCGAGACCGAGGAGGGAGAGGAATCGTCGTTGCATGTTACCGGGGAAGACGACGAACAGGAGAATTGCATAAGACCGATATTTAGAGTGGAAGGAACGAAGATGTATGAAAGGAAAGGTCCCATCCAACGGAGGATCCCCAAAGTTCAGGTAGCGCAGCCAACCCAGCAGCACATGCAAACGGTTCCGCTGGACATGATCAACGAACCCTTGAATATGGGCGCCATCACGCAAGAGGCGCTCAGCAATTTGCCTTCCAAGAAACCTGTCAACGTCAAGGTCGGCGACAAGGTGGTCAAAGTGCAGAAATTTATTATTAGCAAGGAGGAGATGAAACAGATGGCCAAGCTGGGCATCTTAGAGCTGAAAAATGGCCAGGTGACGATGAAAAATCCAGGACAACCAATTTTAAATGCCGTCATTAAGCCGGTACAACAAAGTGACATCGAAAGCTTATTGAATAGCCAAAGACACTCTATTAGGACCCCAATCAAGCAGTACGAGAGGAGAGCTCAGAGTAGCCAAAGCTTTTCTGAAAATAAGCTTCAACGTATTATTGAAGACTTTAATTAG
- Protein Sequence
- MEERRIMLRDMKICRFCFHTNENDLTSIYQKEVKAVPLPVQIMSCVSIEVFPNDGFPQQICNICRQQTNQSYIFKSNCKKADDALKNFLQSGELIDLEIVKSSLSNLKRHPASKVITPIKDVRIVANKSPSLESPKIKRTKLDDGTEVVTLSVPQPESTESQDESSQDSIEESLNTNAEHAEETYNANRFDDPLHIPEIPEQVQTDIFSCQYCERSFPLKQLLELHVTTRHRERQFACAQCDNKFFTKYDMMKHQSTHSEHKPFSCSVCGKDFAREALLRRHEQTHNEAPKYLCLHCDRTFLVKDDLDNHAKKHDKKRPFVCETCDKSFVFKQGLERHINSVHAQDRPHKCNYCDASFNSQIRLTRHITTHAGLRPYPCKICGRTFLLSHHLTRHMRSHYAADQGRQPEEAVGQHKCDICSMSFKRKDSLINHSAIHSMVNLRCVICNTSFENAKMVKEHITTHLQGLSYPCDRCDYSFETQDQLEEHELKHAEMEYEEQIEQEVISEVNQIRNQMSAESNTDDERFVENGEVINYRISDIPDPTTTIIPRSAASPPFSKSSSTSPPDFGRSPPAPETTDGLNQFFKTEISETEEGEESSLHVTGEDDEQENCIRPIFRVEGTKMYERKGPIQRRIPKVQVAQPTQQHMQTVPLDMINEPLNMGAITQEALSNLPSKKPVNVKVGDKVVKVQKFIISKEEMKQMAKLGILELKNGQVTMKNPGQPILNAVIKPVQQSDIESLLNSQRHSIRTPIKQYERRAQSSQSFSENKLQRIIEDFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -