Ppla006841.3
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- salm
- Assembly
- GCA_963971165.1
- Location
- OZ020189.1:24202862-24222027[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.6e-06 0.0019 20.9 0.9 1 23 356 378 356 378 0.98 2 9 1.3e-05 0.0025 20.5 1.9 1 23 384 406 384 406 0.98 3 9 0.12 23 8.1 3.8 2 23 716 737 715 737 0.98 4 9 1.2e-07 2.2e-05 27.0 0.6 1 23 743 765 743 765 0.97 5 9 0.00011 0.022 17.5 2.6 1 23 775 797 775 797 0.98 6 9 0.15 29 7.8 4.5 2 23 1073 1094 1072 1094 0.97 7 9 0.15 28 7.8 1.0 1 13 1100 1112 1100 1114 0.92 8 9 2.6e-06 0.00051 22.7 4.0 3 23 1289 1309 1287 1309 0.96 9 9 3.8e-07 7.4e-05 25.4 0.9 1 23 1315 1337 1315 1337 0.98
Sequence Information
- Coding Sequence
- ATGTATTCGAGAGAGCGGACGTACTCGCTTCTTCTTCGGTATTTCTTGTCTCGTTTTATTTATTCCGGTGTTTTGTTTTCAGATGGCCTTGATGCGAACGCCAAAGACCTGCCCGACGTGCTTATGTGTCAACGCTGCCAAGAACAGTTCACCGAATTGCCGGAGTATATAACACACAAAGTCGAGTGCGACAAGAAAGCAATTAAACATGACGACCCCGCGCATTCCGATCCGGAAGATATGGTGGTCTCCGAGGATGACGAAGATGAAGACGATACCGGTGGAAAACAACTTGAACGTATGCGGCGCCACAGACAAGACGCCGCGAATAATAATAGTGTGGACGAAAGTTCATCGGACGATAATCGTCTTACTCTTCCGTTTCCCCCACCCGCGGCCCCAGGACATGTAACATTGGAAGCTCTTCAAAATACTAAAGTAGCTGTTGCGCAATTCGCAGCTACTGCTATGGCGAATAACACAGATAACGAAACTGCCTTGCAAGAGCTAGCCGTTTTGCAGTCAACTTTGTTTACATTGCAACATCAACAAGTACTACAGCTGCAATTAATAAACCAGCTCCAACATCAGCTTCAAATAGATAAACATAAGGAAGACGAGCAAAGTGAGTCTCCGCTATCTGAAAATGGAGGCGAAAATTCACCTTTAGATACCGCGAGAACGCCACCACTAAAATCGGAAACTCGTGAACCATCTCCGGATTTGGCCCAAGGCCCTATATTGCAGCCAATACCGCAACCATCTGAAACACCCGAAAAACAACATGAAAATTGTGTTTCGTTAAATCTTCCTTTTCAGATGCAAGCTCCAATGTGTTCCATATCGGCATCTTTAGCATCAACAATTATCACACATAGTAATGATCCGCCTTTAGCAGAAGAGCCCAATACGCTAGTAATGTTACAAAAGCGTGCACAAGAAGTATTAGACAATGCTAGCCAAGGTCTACTGGCAACAAATTTAGCAGACGAATTAGCATTTAGGAAGAGTAAAGGATCAATGTCGCCTTACGACTCAAAGGGGCGCAATGAACCATTTTTTAAGCACCGTTGCAGATATTGTGGTAAAGTGTTTGGATCAGACTCCGCTCTTCAAATTCATATCCGGTCACATACAGGAGAACGTCCATATAAGTGCAATGTTTGTGGTAGCCGCTTTACAACAAAAGGTAACTTAAAAGTACATTTCCAAAGACATAGTGCTAAATTTCCGCATATCAAAATGAATCCAAACCCAGTACCAGAACATCTCGATAAATATCATCCTCCATTATTAGCTCAACTTGGACAACAACAATTATCACCTGGAGGACATCCTCCACCTCCGCATTTAAGCTTTCCAGGTGCACCTCCGTTCCCTCCTACATCATTACCATCATTACCTTTGTATCGTCCCCCAATTCCTCCACCACCAGACTTAATCAATAGTAGATTGCAACCTTCACCACATACACCGCCTCATAGATTATTTTCACACCATCCGCTATTTATTAAACGGGAAGAACAAGAAGCTCCAGCCGATTTAAGGAAACCTCAAAGATCTACACCTACGCCAGAAAAAAGTTTCTGTAAAAGTGAACCAGGTAACGATGAATCTAAAAAAGACAGCTCTGAAGGCGAGAAGATCAGCCTCACACAAATTACGCCAAAACAAGAACCAAATTATCACGAAAACGAACCAGAAAATGAACTGGAGAGAGCTGTCTCGCCTAATGTGTATGACGACTGTAGCAATGACAGTAAATATAGCAATGAAGAAGGCATGGAACAAAGAAGTCCAGATAACCGCTCGGAAATGCAAGATGAACCCGAAAACTTATCCGGCCGATCTGACCATATAACAACACCTTTGAGTATTGCAACTGGACAGAGACTACCAGCAAATTTGTCATTTGGACACACAGCTTCACCTCCTAGTAGTACGTCATCTGGAAGTCTAGGGCCCTTTCCAACAACACCCGTTCATGATATTACTAAAGATCCTTATATTTACACCTGTCTACTGCCCAGACCCGGCAGCAATGACAATTCATGGGAGAGTTTAATAGAAGTAACAAAAACATCTGAAACTAGCAAATTACAACAACTTGTTGATAACATTGAGCACAAACTCTCGGATCCAAACCAATGTGTCATTTGCCATCGAGTTTTATCATGTAAGAGCGCTCTCCAGATGCATTACCGAACTCATACTGGTGAAAGGCCATTTAGGTGTAAAATATGTGGACGTGCTTTTACTACGAAGGGAAACCTGAAGACGCATATGGGAGTGCATAGAGCAAAGCCGCCCATGCGCGTGCTACATCAATGTCCAGTATGCCACAAAAAGTTTACCAATGCCTTAGTTTTACAGCAACATATCCGCCTTCATACAGGCGAACCCACTGATCTCACACCGGAACAGATACAAGCAGCAGAAGTAAAAGACTTTCCTTCGCACGGCGGTTTTCCAGGTCTTCCAAATTCCATGCATCCATTCCTAGGCCAGGGTTTTCCGGTACCTGGCTTTTCACCTCTGGGAAACCCAGGTGTACCTtttaatatgaaatttgacaaggACGAACGATCTGAACATGAAAGTATGGACGATGATGATGACGATGATGATAATATGAGCTGCAATACCGATAATCAAAACATGCCCCCTTTCCCCTCTTCACCATCCGGAAGTAACAATCATATCAATCCTAATACCTCAATAGCATCACAATTAACAAATAGTGATTTAAATTGTTCCACTGAAGATTTAAGTTGTAATAGAGCAATGACATCTCCATCAAATATGCAGAATGGTGAGAAATCTCCTAATCGATCAGTAACCAGTCCAGAAAGTGCGGAAGTTCAGTCACCTCATAACAGAGTAACAACAACACCCGTCCAGATACCCAGACCACCATCTTCACAGCAAGCCAGCAGTCCAACGCCCTCTGAATGCAATTCTTTAGGAGCGCTAGACCTCACGCCCAAGCAAAATCAAAATCAGATTCAACCCATCACAAGTCCAGGCCCAAGTCCAAGTGGTGCACCACCTACACTGTTCTCAGCTTTTGGTCTTTTGCCCCAAGTCTCCCAGAACTCCTCGCCTTTGATGACTTCAGCATTATCATCTCTCACGTCGTCGGTGCTGACTTCAACATCGTTTAGTCCACTTAGGTTAGGCATGGGGCATGGACCTAGTTTGGGTCGTGGAAACACAACTTGTAACTTGTGCTTCAAAACATTTGCTTGTCACTCAGCTTTAGAAATCCACTACAGGAGTCATACAAAAGAAAGGCCTTTTAAATGTTCAGTATGTGATAGGGGATTTTCTACAAAGGTTAGTTGTGACTGCAACAAGCAGAGGCGTATCCAGGAGGACGCTAAGCCTTGGAGGGCTAGATCCAGAAAACCTGCATCCCGCGACATCCCTTCAGTATTCCCTTTACCGATGAGCCCCGGATACGCCTCCTCTTGGATGCAGATGGCGGGAAATATGAAACAGCATATGCTGACTCACAAGATCCGGGACATGCCACAACATATGTTTGAGAACAAAACTCCCTCACTTAGTGGAGATGATTCAACCTCTTTGCCTCCAAATCTGCTTCCACGAGAGCACTCAAATGACGGCGATCAGTCAATGCAACAACTTCAGCAGCAGCAACAACAGCAACAACAGCCACAACCGCCACCACAATCACAGCAGCCACCTCCTCCCATTCCTCCTATATCTCTACCTCAAATATCTCAAATGCTATCGCAAGTTCAAGAACAGAAGGATCAACCACAGATAAAAAGAGAACCAACGGAGACTGAACTACCTTTACCCAAACGCCCTCCAAGCTTGCAGTCAAGTAAGCACTTGTGTCACGTGTGCAATAAGAACTTTTCATCCAGCTCGGCCTTGCAGATTCACATGAGGACTCACACAGGTGATAAGCCCTTCAGATGTACGGTGTGCCAGAAAGCGTTCACCACCAAAGGGAACCTTAAGGTTCACATGGGTACCCATATGTGGAGCAACGGAGCATCTCGACGCGGTCGTCGCATGTCTCTCGATCTGCCCCCCCTCCCCATGACCCCCAAGGATTCAGAATTTCTGCAGCGGAGGCCCGACCTCTTCTACCCGTACCTCCCGGCTCCGTTCCTTAACGGCATGCAACAAAAACTCAACGAGATGTCGTCAGTAGGCCCAAACCAAAACGGTCTGGCTCCCTCAGCGAAATATGGGGGTCTGCTTGGCTTCGGTTACCCGCCGCAAGAGGGCGTAAGAGCGCAAACGAATTCGCCCGAACGAGCTTCTGACCGACCTCCAAGTGAGCCAGAGTCCAGACCGGGACTTTGGGATTTGCATTTCGAGcgaaaagctgcagaagccccGCGCGAAGATCTTTTGTCTGCTTCCAGGGAAGGTCTGGCCGCTTGA
- Protein Sequence
- MYSRERTYSLLLRYFLSRFIYSGVLFSDGLDANAKDLPDVLMCQRCQEQFTELPEYITHKVECDKKAIKHDDPAHSDPEDMVVSEDDEDEDDTGGKQLERMRRHRQDAANNNSVDESSSDDNRLTLPFPPPAAPGHVTLEALQNTKVAVAQFAATAMANNTDNETALQELAVLQSTLFTLQHQQVLQLQLINQLQHQLQIDKHKEDEQSESPLSENGGENSPLDTARTPPLKSETREPSPDLAQGPILQPIPQPSETPEKQHENCVSLNLPFQMQAPMCSISASLASTIITHSNDPPLAEEPNTLVMLQKRAQEVLDNASQGLLATNLADELAFRKSKGSMSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQQLSPGGHPPPPHLSFPGAPPFPPTSLPSLPLYRPPIPPPPDLINSRLQPSPHTPPHRLFSHHPLFIKREEQEAPADLRKPQRSTPTPEKSFCKSEPGNDESKKDSSEGEKISLTQITPKQEPNYHENEPENELERAVSPNVYDDCSNDSKYSNEEGMEQRSPDNRSEMQDEPENLSGRSDHITTPLSIATGQRLPANLSFGHTASPPSSTSSGSLGPFPTTPVHDITKDPYIYTCLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSHGGFPGLPNSMHPFLGQGFPVPGFSPLGNPGVPFNMKFDKDERSEHESMDDDDDDDDNMSCNTDNQNMPPFPSSPSGSNNHINPNTSIASQLTNSDLNCSTEDLSCNRAMTSPSNMQNGEKSPNRSVTSPESAEVQSPHNRVTTTPVQIPRPPSSQQASSPTPSECNSLGALDLTPKQNQNQIQPITSPGPSPSGAPPTLFSAFGLLPQVSQNSSPLMTSALSSLTSSVLTSTSFSPLRLGMGHGPSLGRGNTTCNLCFKTFACHSALEIHYRSHTKERPFKCSVCDRGFSTKVSCDCNKQRRIQEDAKPWRARSRKPASRDIPSVFPLPMSPGYASSWMQMAGNMKQHMLTHKIRDMPQHMFENKTPSLSGDDSTSLPPNLLPREHSNDGDQSMQQLQQQQQQQQQPQPPPQSQQPPPPIPPISLPQISQMLSQVQEQKDQPQIKREPTETELPLPKRPPSLQSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPLPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEMSSVGPNQNGLAPSAKYGGLLGFGYPPQEGVRAQTNSPERASDRPPSEPESRPGLWDLHFERKAAEAPREDLLSASREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444418;
- 90% Identity
- -
- 80% Identity
- -