Basic Information

Insect: Philopedon plagiatum
Gene Symbol: -
Assembly: GCA_963971165.1
Location: OZ020193.1:110630440-110636109[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.39 76 6.4 1.3 2 23 276 297 275 297 0.96

2 11 0.0026 0.5 13.3 3.5 1 23 303 326 303 326 0.95

3 11 0.0011 0.21 14.5 1.5 1 23 332 355 332 355 0.98

4 11 8.5e-07 0.00017 24.2 3.4 3 23 442 462 441 462 0.99

5 11 2.6e-06 0.0005 22.7 2.6 1 23 468 490 468 490 0.99

6 11 4.2e-08 8.1e-06 28.4 2.0 1 23 496 518 496 518 0.98

7 11 2.5e-06 0.00048 22.8 2.9 2 23 524 545 524 545 0.98

8 11 3.7e-06 0.00071 22.2 1.9 1 23 551 573 551 573 0.98

9 11 2e-05 0.0039 19.9 2.4 1 23 579 601 579 601 0.98

10 11 0.00026 0.051 16.4 2.8 1 23 607 629 607 629 0.97

11 11 0.017 3.3 10.7 6.3 1 23 640 663 640 663 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.39	76	6.4	1.3	2	23	276	297	275	297	0.96
2	11	0.0026	0.5	13.3	3.5	1	23	303	326	303	326	0.95
3	11	0.0011	0.21	14.5	1.5	1	23	332	355	332	355	0.98
4	11	8.5e-07	0.00017	24.2	3.4	3	23	442	462	441	462	0.99
5	11	2.6e-06	0.0005	22.7	2.6	1	23	468	490	468	490	0.99
6	11	4.2e-08	8.1e-06	28.4	2.0	1	23	496	518	496	518	0.98
7	11	2.5e-06	0.00048	22.8	2.9	2	23	524	545	524	545	0.98
8	11	3.7e-06	0.00071	22.2	1.9	1	23	551	573	551	573	0.98
9	11	2e-05	0.0039	19.9	2.4	1	23	579	601	579	601	0.98
10	11	0.00026	0.051	16.4	2.8	1	23	607	629	607	629	0.97
11	11	0.017	3.3	10.7	6.3	1	23	640	663	640	663	0.97

Sequence Information

Coding Sequence: ATGGAGCAAGAAAACGATGAAATTTTAGTCAAAATCACCGAGGTGTGCAGAGCCTGCCTCAGCCAAACCAACAACATGAAATGTCTGCTAGAAACCAGTGAAGAAACGTTACGATTATTGTCTAAATTTGCGTCCGTCGCTAACCTGCAGATAGAAGTCGGTTGTAAGTATCCTTCTTATCTGTGCCATAtttgtgaagaaaaaattataaattcttaTGAGTTTCAACTACAGTGTCACAAGTCCAACGATTTGGTCAAGGAGTACATGGCAGTATTTgaaaagCAAGAGACACCTCTCGTAGAGCCAGGGTTAGAAATTATCTCACAAGATGTTAATCTAACTCAAATACAACAAAATAGTATGGAATCCTTGGACCCTCCATATGATAGCAATGTACACATTACAACAGAACTAGATGAGGAGTTCCAAAAAGagttaaaaaacgaaatttcgagtttaaaacaaaaatctaagCATAAGAAGgattttacatCCAAAGAAGAAAGTAATAGTAAGTGTAGTGCCCTAGAAAAATGTAACAACTTCACAGCAAAAGaagttccattaaaaaataaggcGCAGAGAATGAGATTAAAGCAGTACTCTATTAAGGATGTTGAAAAAGCCATAAATATTGTCAGAGAAAAAATTTACAGACGTGCTACATgtattttttgcagttttacTGCCATTACAAATAGAAGTCTGTCAGTGCATGTAACTAGAGTGCATAGAGAAAAGAAAGGAAAATGGTGTTCATCTTGCAATCAAGTTATAGAAAATCGGACTAGTCACAACAAAGAAGTTCATTATGAAGATCTCAAATGCCCTTTCTGTAACAAAATCAAATCCAATATGGGCCACTTTATGGAGCATCTGGCAAGTCATTCTGCTGAGAGGCTTCATAAATGTGACATCTGTTATAAATCGTTTATAGCCCCCAGGCATTTGAGGATCCACAAAGAAAAAACGCACGCCAATGAACATCCTTTTAAATGTAATATTTGcaagaaaatttttttgaaagaaaagctTTTAAAGTTACACATCAAGACAGATCACAGTTCTCAACAATCTTTGAACGACACTGAATCTAAATCTGTAGAAGGGAGTATCAATGTAGCCAAAGAAGAGACCAACAAAAATGATGAAGATGGCAAGTTATATTGCAATAGTGATTCTGCCAAGGAGGTTGAAGACAAGTCTTCAAAATCTCAAAATTTTTGTAAGGAATGCAATAGACAGGTAAAAAACTTCTCGAGCCATTATAGTAAGCACCATGATAAAATACAATCTGCGTACATTGAGAAACAAAATTTATGTCCACATTGCGGCAAGAGATTCAAaacCAAATCCAAGATGAACGTGCATATAAGAACACATACGGGAGAGGCGCCTTATAAATGTCAGTACTGTGATAAGAGATTTAAAACTAGAAATGTTCTGGTGGTACATCAGCGTACTCACACCGGCGAGAAACCTTACTCGTGTACTGTTTGTGGAAAAtgttttgcGCAGTCCAGCATGTTAAACACTCACATGAGAATTCACACGGGAAGACCAGAGCAGTGTACAATTTGTGAAAAGAGGTTTTGTCGCCCTGCCGAGTTAAAGCTACACATGAGAAAACATACAgGTGAAAAACCTTATATATGCGACCAGTGCGGGCAAGGTTTTAAGCAAAAAAGTCACCTTGTTGAGCACACCAAAACTCATACAGAAGATAGACCGTTCAAGTGTGAATATTGTGGAAAGGCATTCAAAAGTAGTGGGACTCTTAAGTGTCATATTCAGATACATACAGGCCAAAAACCTTTTAAATGCTCCCAATGCTCGTACGCTTGTCGGCAACCATATAGTCTTACTCAACACATGGCTCAACATACGAATGACAAACCCCAGCCAGACTACCCCCACAAATGTCAGTTATGTGAAAGGAATTTCGCTACTGTAGCGCACTTAACAACTCACCATAACAGGTAtcattcaaatataaaaataatacaagcgATACCAGAAAACGAAATGGTTATATCCGATTATCCTGAGGCGGATCAGAACAATCAGGATATAATATATGACGTGTCTCAGGACGACGCCGGTCAAGTTCAAACAGTTGAGACGGTTGAAAACGTCGACAGAATGATCATAACAGAGATAGCAGACGCTGATGACATAAAATTTGAACCAATTCAGATTCAGATCACGAGATTGTAG
Protein Sequence: MEQENDEILVKITEVCRACLSQTNNMKCLLETSEETLRLLSKFASVANLQIEVGCKYPSYLCHICEEKIINSYEFQLQCHKSNDLVKEYMAVFEKQETPLVEPGLEIISQDVNLTQIQQNSMESLDPPYDSNVHITTELDEEFQKELKNEISSLKQKSKHKKDFTSKEESNSKCSALEKCNNFTAKEVPLKNKAQRMRLKQYSIKDVEKAINIVREKIYRRATCIFCSFTAITNRSLSVHVTRVHREKKGKWCSSCNQVIENRTSHNKEVHYEDLKCPFCNKIKSNMGHFMEHLASHSAERLHKCDICYKSFIAPRHLRIHKEKTHANEHPFKCNICKKIFLKEKLLKLHIKTDHSSQQSLNDTESKSVEGSINVAKEETNKNDEDGKLYCNSDSAKEVEDKSSKSQNFCKECNRQVKNFSSHYSKHHDKIQSAYIEKQNLCPHCGKRFKTKSKMNVHIRTHTGEAPYKCQYCDKRFKTRNVLVVHQRTHTGEKPYSCTVCGKCFAQSSMLNTHMRIHTGRPEQCTICEKRFCRPAELKLHMRKHTGEKPYICDQCGQGFKQKSHLVEHTKTHTEDRPFKCEYCGKAFKSSGTLKCHIQIHTGQKPFKCSQCSYACRQPYSLTQHMAQHTNDKPQPDYPHKCQLCERNFATVAHLTTHHNRYHSNIKIIQAIPENEMVISDYPEADQNNQDIIYDVSQDDAGQVQTVETVENVDRMIITEIADADDIKFEPIQIQITRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -