Ppla064390.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020193.1:96828941-96831643[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0078 1.5 11.8 0.5 1 23 64 88 64 89 0.96 2 15 0.0033 0.63 13.0 2.6 1 23 95 120 95 120 0.96 3 15 0.022 4.2 10.4 0.3 1 23 160 185 160 185 0.92 4 15 0.01 2 11.4 0.1 1 23 191 215 191 216 0.95 5 15 0.0037 0.72 12.8 2.5 1 23 222 247 222 247 0.95 6 15 8.5e-05 0.017 18.0 0.8 3 23 261 284 260 284 0.91 7 15 0.0094 1.8 11.5 0.5 1 23 306 331 306 331 0.92 8 15 2.5e-05 0.0048 19.7 2.0 1 23 337 362 337 362 0.96 9 15 9.8e-05 0.019 17.8 0.2 3 23 375 398 374 398 0.92 10 15 0.00028 0.054 16.3 1.3 1 21 403 423 403 426 0.90 11 15 9.4e-05 0.018 17.8 4.9 1 23 432 454 432 454 0.98 12 15 0.057 11 9.1 0.8 5 22 460 477 457 477 0.94 13 15 0.0078 1.5 11.8 3.5 1 23 486 509 486 509 0.91 14 15 0.00075 0.14 15.0 1.3 2 23 519 543 518 543 0.96 15 15 0.026 5 10.2 0.2 2 23 553 577 552 577 0.95
Sequence Information
- Coding Sequence
- ATGAGCTTAGATATAGTTGAGGCCAAACAAAATTCAGTCGACAAGCCATTTAAGTGTGAAAACGATGGTTGCACTGAAACAGTCTGTAGGCATTCTggttttgcaaaaaatgaaGAGTTGTGCACTGAAAAGACACGGACAAGGAAGAGGCCTAGAGAAGGTAATGAAGAAGGGAAAAATAAGAAACCGTACAAATGTGAAGAATCTGATTGTAATGCTGCATTCACGGCGCCGAATCGACTACAGAAACATACACTCATTCACCATTGTGGACTAAAGCTCTTTAAATGTGATTATGAAGGTTGTGGTAAAAGCTACAGAAAAGACTCTCGTTTAAAGAAGCACAAATCCAAAAGTCactttttcaaagaaaataagCGAAAATTCGTCTTTGAACAACACACGGCAAGGGCTCATGCAGAGCATGATGATAACTTGAGACCTAATGTTATTAGAAAACCAAATGACAAGAAAAGGCATATATGTGATGAACCAGGCTGTAAAGCTGCATTTAATCGGCCATGGCGACTGAAGAATCATAAGCAAACTGCTCATTCTGGTAAAAAGTCGTTCAGATGTGAAGAACCTGACTGTGATGCTGCATTTACGGGGCCTAATCGACTACAGGCCCATAAACTCATTCACCATTGTGAAGAAAAACCCTTTAAATGTGATTATAAAGGGTGTGGTAAAAGTTATAGACTTGATGCTCATTTAAAAAGGCACAAAGTCACAAGCCACTCTTTCGGAAGAGATACAGAAGAAACACGAGTTGCCATCTGTGAGATTAAAGGTTGTGGTAAAGTTTATTGTAACAAATATAGCCTTAACCAACATATGGCTAGCACTCATGCAGAACATGAAGATGACTTCAGACCCAGCGGTTGTAAGAGACCAAGTGACATTGAAAAAAGGCATATATGTGATGAGCCAGGGTGTACTGCTTCATTCAACCGACCGTATCGGCTGAAAAATCATAAACTGACAGCTCATGGTGATGAAAGGCCATTTAAATGTGATTTTGAAGACTGTGACAAGAGCTATACCAATGAGTCACATTTGGCTAGACACAGAACCATAAGTCACAACCCAGAAGAAATGGGTGCTGCAAAAGAGGTGATTTGTGAAATGGACGGTTGTGGGAGGATCTTTGCAAATAAGTATAGCCTTAAGAAACACATAGCTAAAAGTCACACACAGTTCCCATTCCCGTGTCAGGACTGCGACGAAAAGTTTAAACGTAGGAATCAACTGCATGCTCATAAGGTGGAAGTGCATGAAAAAGAAGCTCCTTATAAGTGTGATAAGTGCCCAAAGACGTTTGTACAGTATCACCTATACAATAAACACttgaaaaatcataaaacatACCAGTGTGACTGTGAGAAGACATTCGGTAAGTGgacacaatttttaaaacacagaaGAACCGAGTGTAGTGTTAAGAAACAGGAACATAAATGTGCAATTTGTGAAAAAACTTTTGCTTTTAAACAAACTTTAACCCAACATTCTTTACATGTGCACATACCTGACAGTCAAGTTGATCTTTTAAAATGTCCTTATTTAAATTGCAATCGCTCATACAAGTATAAAAACGGTCTTAATTATCATATAAGGAGGTACCATGAAAAGCTAGTGCAGAGCCAGGAAGTCAAGTGCCCAGAGAAAAATTGTGAAGTGGTACTTCAATCTAACAAGAATCTAAAACAGCATTTAAGAATAGTACACAATGGTCAACCGGCAAAAATAAGGAAACCTAGAAAGCCGAGGAAAGATAAAGGCTTACCTAAAAAGTCTATGGCTTCCAGACTGAGTGGAGCCAAAGTACCCCTTGTCGAGAATTACAGGAACATTGTTAGTACTATGGATGATGACTtaagaaagaaaattttaaatgtagtGCCTTTAGATGAGGACGAAGGACGTGAAATCGTGGATACATTAAATGAGAGACCTAAAGATGTgattaaagatttaaaaatttgtattactaAATATACCGCCAATGCTACAGATAAGCAGGTTGAAGAGAACACCAAAAAAAGTAGTCAAAGTACATCAGACTTCGGTGAATCATGTACCTTGTCTAGTGATATTGCAAGTAGTAAGGAAAATGGTGAAAATCCTCATGAAACTACATCCTTTTCTATAGTTAGCATGGATATAGACTCTGAATGCTCAAGACATCCGAATGATATAGAAGTTAAATCAAAGGAAGCTGAATGTAAGGCAAATAAAACCTGTGAAAATGCAAATGAAGAAATTGTTAACAATGAAAATAAAGCACCATATACAACAGAAATATCAACTACAAATAGTGTTTCTGGAGTTGACATGGATGTAGATAATGAAACCTCAAAAAATCCCATTATTTTAAATGTGCCTTCAAGTGACGACGCATTGTATCTAAATATGGACtcagatttatttatttctagtcAAAATAGTGTGGACAGTGGAGTAGTTATATTTGACTTTCccgaaattgaaaattttaaccaTAGTGATGATACTGAATCTAATGAAGTAACCATTTtagaacaaaataaaactgTTGTAGAGCAAACCGGGACTAAAAATAATGAACGTTGTGATAGTGATAACTCTATTTTAGATAAGCAAGAACTTAAAAAAAGACTTGGCGTGATGTTAAAAGATGTTTTTGCTGTGCTTaaacatttagaaaataatgTAAAGTAA
- Protein Sequence
- MSLDIVEAKQNSVDKPFKCENDGCTETVCRHSGFAKNEELCTEKTRTRKRPREGNEEGKNKKPYKCEESDCNAAFTAPNRLQKHTLIHHCGLKLFKCDYEGCGKSYRKDSRLKKHKSKSHFFKENKRKFVFEQHTARAHAEHDDNLRPNVIRKPNDKKRHICDEPGCKAAFNRPWRLKNHKQTAHSGKKSFRCEEPDCDAAFTGPNRLQAHKLIHHCEEKPFKCDYKGCGKSYRLDAHLKRHKVTSHSFGRDTEETRVAICEIKGCGKVYCNKYSLNQHMASTHAEHEDDFRPSGCKRPSDIEKRHICDEPGCTASFNRPYRLKNHKLTAHGDERPFKCDFEDCDKSYTNESHLARHRTISHNPEEMGAAKEVICEMDGCGRIFANKYSLKKHIAKSHTQFPFPCQDCDEKFKRRNQLHAHKVEVHEKEAPYKCDKCPKTFVQYHLYNKHLKNHKTYQCDCEKTFGKWTQFLKHRRTECSVKKQEHKCAICEKTFAFKQTLTQHSLHVHIPDSQVDLLKCPYLNCNRSYKYKNGLNYHIRRYHEKLVQSQEVKCPEKNCEVVLQSNKNLKQHLRIVHNGQPAKIRKPRKPRKDKGLPKKSMASRLSGAKVPLVENYRNIVSTMDDDLRKKILNVVPLDEDEGREIVDTLNERPKDVIKDLKICITKYTANATDKQVEENTKKSSQSTSDFGESCTLSSDIASSKENGENPHETTSFSIVSMDIDSECSRHPNDIEVKSKEAECKANKTCENANEEIVNNENKAPYTTEISTTNSVSGVDMDVDNETSKNPIILNVPSSDDALYLNMDSDLFISSQNSVDSGVVIFDFPEIENFNHSDDTESNEVTILEQNKTVVEQTGTKNNERCDSDNSILDKQELKKRLGVMLKDVFAVLKHLENNVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -