Ppla072797.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- zfh1
- Assembly
- GCA_963971165.1
- Location
- OZ020194.1:84215891-84225731[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 7.2 1.4e+03 2.5 4.0 1 23 130 149 130 149 0.79 2 19 0.016 3.2 10.8 0.1 1 23 152 175 152 175 0.97 3 19 0.071 14 8.8 0.3 1 23 182 204 182 204 0.94 4 19 0.38 73 6.5 2.2 1 23 208 232 208 232 0.86 5 19 0.0036 0.7 12.8 0.0 2 23 239 260 238 260 0.97 6 19 0.0018 0.34 13.8 2.3 1 23 266 289 266 289 0.93 7 19 5.6e-05 0.011 18.5 0.3 1 20 300 319 300 320 0.96 8 19 3.8e-05 0.0074 19.1 1.1 2 23 332 353 331 353 0.97 9 19 3e-05 0.0059 19.4 3.6 1 23 359 381 359 381 0.97 10 19 0.24 46 7.1 0.5 2 23 447 466 447 466 0.76 11 19 0.21 41 7.3 1.0 3 12 480 489 479 498 0.83 12 19 0.16 30 7.7 0.4 1 23 502 524 502 524 0.97 13 19 0.0018 0.35 13.8 0.6 1 23 529 551 529 551 0.95 14 19 0.00086 0.17 14.8 2.4 1 22 555 576 555 576 0.96 15 19 0.1 20 8.3 8.6 1 23 583 605 583 605 0.97 16 19 0.007 1.4 11.9 7.3 1 23 611 634 611 634 0.94 17 19 0.002 0.39 13.6 3.0 1 23 645 668 645 668 0.96 18 19 4.6e-05 0.0088 18.8 0.5 2 23 677 698 676 698 0.97 19 19 0.00031 0.059 16.2 2.2 1 23 704 727 704 727 0.96
Sequence Information
- Coding Sequence
- ATGCACAATAATTGCAAGAATTGCTCCAAGGCAACCAAATTATATACTGTTAACAAGAATCAAGGACATATTCACAAATCGTTATATTTCATGTTCAGGCAAAGTGAGATTTCCTTTAACTCAGAGCAAGAAGCCGAGGAAATTTTGATACACTTTGTAGAAGATGACGATGATGATGagttacaatatttaattaatgaCGACAGTAAAAGAAGTGAAGTCTTAGAAGAAATAGATGAAAATCAGTTCGTTCAGCTGATAGATCCGGAAGAACTAATAATTAATGTTAAAGATTCAAAAGGAAAACATGCGGAGAAACAGCCATACTTTGTTCAGGTTGTAGATGcggaaaaacgaaaaaaagaaaatgtggCACAAGCGGGGAAGCACCAGTGTAATATCTGCGGAGGTTATTTTACGCATATGAAACGTCATCTTGAAAGTCACGGTCCTTATAGATGCATGGACTGCCTCATAGGTTTTAAATCAGAAGCCCAATACGAGGACCACCTATTGAAAGTACATAATCAGAAAGTTGAAAGTTATTCTTGTCAGTTTTGTCCAATGGGATTTTCAGAAGTCACTAACTTGGCCATCCACAATTTTAAGCATACAGGACAATATACCTGTCCTATTTGTAACTTTACTGTCAAAGGAAAATACAGGAATTCTTTGATAAACCATATCAAAAGGCACGAAGGGAATTATACCATCAAATGTGAAATTTGTGGACAGGGATTTATTGAGAAAAGTATTTTGGTGAGTCACATGGAGATGCATGAAGCTATTCCCAAATATGAGTGCGAGTACTGCCAGAAGAAGTTCACGGTAAAAAGgtacTTGGATGTCCATAAAAGTTATAATCACAAAAAGGAAATGTATGGAATAGAAGAGATGTTCCAATGCGAGGTTTGCGGACGAAGCTTTACCTTTGAGAAAAGTTTGGTTAGACATTTGAGTTGTATCCATAAGATTGGAACTGATAGAACTGTGGAATGCCCGgtatgCCATAAAATAATAGCCAATAACCACAATCTTAAAAGGCACGTGCGCGTCCATACCGGCGAAAAGAGGTTCTGTTGCGACACTTGTGGAAAAGCTTTCTCAGAAAAAAAGTACCTCCAAAAACACCAAACCGTACACATGAAAGAAAGATTAAGAAAACGCATAACACTTGATCTCTCAGAAAGCGATGAAGATAGAAAGTTTTCAAGTTTGGTTACGTCCCAAGATTTAACTAGTCTATCAGCTGGttgtattattgttaaaaatgaaaGCGATGATGAATTCGCTGAAGAGGACAATGAGGATAACTTTACCGCTATTTCAAAATCAGAAGTATGTCCCATATGCGGCAAAACTGTTAAATATTTAAGACAACACATTAAGTTCCAACACCAGGGTATTAAAAGACCCGAACGGGACCTGTCGGGATTATGTCCTATTTGCGGGAAATTTTTTAAGCACGTAACCTATCATATCAGTAAAAGTCACCAGGAAGAGTTTCCTTGCGACCAATgttgcgccatatttaagtccCAAGATCTTCTAGATGAACATGTGGAGACCCATATAAGTGACCATTACAGATGTGACAACTGTACAATGGTTTTTAAGACCCTCACTGACCTGGCTATTCACAATTATAGTCATACCAATACGTACGTCTGTCCTAAATGCAATACCGTCTGTAAAACCAGACAGTCCTTAAAGTACCACGTGAGAAAAGAGGAAAAAAGTTTCAACTACCATTGTCACATTTGTGGGCGTGGTTTTGTTCATCAGCATCTATTACTGTGCCATATTGAAAGGCACGAAAATGTTAAAAAGCACGAGTGCGATATATGCCACAAAAAATTCACTTTAAAAACTTACCTGAAAAACCATAAAAAGTTCAATCATAAAAAAGAACTTTTCGGCATTGAAGAAGTTTTTCAATGTGAAATGTGTGCAAGAAAATTTTCTTTCGAGTGTTCTTTAAAGCGCCATCTAAATCTTGTGCATAAAGTTGGAGAAGAAAGAAGTGTGACGTGTCAAgtatgtaacaaagttttaacTACTACATACAGTCTTAACGTTCATATGAGGCTACATACTGGCGAGAAAAATTTTCACTGTAAGGTGTGCGGAGAAGGATTTTCTAGAACTCAGTATGTTACCAGACATATGGCTAGAAGACATGGCGttagaaaagagaaaaattcaACTACGCAGTTATTCGCTGCTGAATAA
- Protein Sequence
- MHNNCKNCSKATKLYTVNKNQGHIHKSLYFMFRQSEISFNSEQEAEEILIHFVEDDDDDELQYLINDDSKRSEVLEEIDENQFVQLIDPEELIINVKDSKGKHAEKQPYFVQVVDAEKRKKENVAQAGKHQCNICGGYFTHMKRHLESHGPYRCMDCLIGFKSEAQYEDHLLKVHNQKVESYSCQFCPMGFSEVTNLAIHNFKHTGQYTCPICNFTVKGKYRNSLINHIKRHEGNYTIKCEICGQGFIEKSILVSHMEMHEAIPKYECEYCQKKFTVKRYLDVHKSYNHKKEMYGIEEMFQCEVCGRSFTFEKSLVRHLSCIHKIGTDRTVECPVCHKIIANNHNLKRHVRVHTGEKRFCCDTCGKAFSEKKYLQKHQTVHMKERLRKRITLDLSESDEDRKFSSLVTSQDLTSLSAGCIIVKNESDDEFAEEDNEDNFTAISKSEVCPICGKTVKYLRQHIKFQHQGIKRPERDLSGLCPICGKFFKHVTYHISKSHQEEFPCDQCCAIFKSQDLLDEHVETHISDHYRCDNCTMVFKTLTDLAIHNYSHTNTYVCPKCNTVCKTRQSLKYHVRKEEKSFNYHCHICGRGFVHQHLLLCHIERHENVKKHECDICHKKFTLKTYLKNHKKFNHKKELFGIEEVFQCEMCARKFSFECSLKRHLNLVHKVGEERSVTCQVCNKVLTTTYSLNVHMRLHTGEKNFHCKVCGEGFSRTQYVTRHMARRHGVRKEKNSTTQLFAAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -