Ppla018516.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020190.1:1666123-1672928[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0078 1.5 11.8 0.4 3 23 227 246 226 246 0.97 2 10 3.6e-05 0.007 19.1 1.4 3 23 254 274 252 274 0.97 3 10 0.067 13 8.8 0.1 1 22 280 301 280 303 0.84 4 10 3e-05 0.0058 19.4 3.3 3 23 311 332 310 332 0.96 5 10 1.2e-06 0.00022 23.8 0.9 1 23 345 367 345 367 0.98 6 10 1.5e-05 0.003 20.3 0.2 1 23 373 395 373 395 0.95 7 10 5.1e-05 0.0099 18.7 1.3 1 23 401 423 401 423 0.97 8 10 1.4e-05 0.0028 20.4 4.4 2 23 430 452 429 452 0.95 9 10 1.2e-05 0.0024 20.6 7.5 1 23 458 480 458 480 0.99 10 10 1.7e-05 0.0033 20.1 2.6 1 23 486 508 486 508 0.97
Sequence Information
- Coding Sequence
- ATGTGTGAAAAAACTGACCACAATATCAGGACATTTGCAGCGTATAATTTGGCAAATGTATGCAGATCTTGCCTGTGTGAGGTGAATCGTGACTGTTTTTCATTAGGAGGGTTTTATCTTGCAAGAAAAGTGgtagatatttataaaaatgttacttCTATTGAGattgGCACAGAAGATGACTTGCCTAAGAAAATATGTGCAACCTGCTATGATCACATAATCAAATTTGATCTGTTTAAAAGCAGGGTTTTGCAATCAGAGAAATTATTGACTGACTATACAAATGAATCTCCTAAGGAAAATGACAttcatttaaaaggtatttttaaatcCGAATTTTTGAGTCTCAATGGCGATTCAGATGAGGACTGTGGCTTCGGAGATGATCGAAAGGAAGATATTTTTGATGGAAGAAGTGATTCCGAGGACGAGATTCCTATATTGGATAGACTGAAGAGGGATGAAGAGCCAGGACAAGAAGACACCGATAAAGATAACAAAGATAGtggtaaaggtaaaaatttaaatggacaATGTGAGacagaattaaaagaaaattgtaaAGAAACAATATTAGATGAGTCTGAAGAGGAATCAAAAGTGAAGCAGAAAAAACGtgttagaaaaaagaaaaattcggATGTAGAAATAAAGAATGAGAGACGaaaagAGCCCTGCGCGGAATGTGGAAAAGTGCTCTTCAGATATAAAATGGAAAACCACATGAGAACTCACACCAAAGAGAAACCTTACGGATGTGAGAAGTGCGGTGCCCACTTTACTGAAAGAAGTAATCTCAGTCGGCATTTAAAAATTCACGGGAACGAGAGACCGTACAAGTGCGCAACATGTGGAAAAGGTTTTTTGCGACCTTCAAGTAGAGCAATACACGAAGTATCTGTTCATACAACGGAAAAGAGTGTATTATGTCCTATTTGCGGAAAGGGATTTAAACATCACTATTTCCTCAGAAAACATATGTCGAATATCCATGAGACTCAGGAGAAAGTTACGATTGAGGGAGCAGGGTACCCATGTCCGATTTGTGGTAATTTTTACAGAACAAAGTCTAGTTTGACCGTTCATAGAAGGAAGCACGAACAATCAAAAGCGTTCCTGTGCAATATTTGCGGAAAGGGATACACGACGAAGGCCGTTTTAGAGAATCACCAGAAAGTCCATACGGGGGAGAAAAATTTCAATTGCGACATTTGTAATAAGAAGTTTAGATATATTACTTCGCTTAAAACGCACGTGATGgttCATAGCGGTGAAAAACCGCTGTCTTGTCCCACGTGTAACAAACAGTTTAGACAGCATTCGCATTTAAATACGCACATCAGAGGGCAGCATTCCGCAGATCGTCCCTACCAATGCAGTTATTGTTCTAAAACCTTTAAACATAAttgtaATTTGACAGTGCATACCAGAATTCATACGGGAGAAACGCCGTACGTCTGCGACATCTGCCACAAAGGATTTTACGATTCGAGCAGCATGAAAAAGCACAGAAAAGGCCACTTCGAGAAAGACAACGGGGCAGCAATAGACTGGAATAAAGTGGAAGTGACTGTTAAACTTGAAGATATTAATTTGCAGACATAA
- Protein Sequence
- MCEKTDHNIRTFAAYNLANVCRSCLCEVNRDCFSLGGFYLARKVVDIYKNVTSIEIGTEDDLPKKICATCYDHIIKFDLFKSRVLQSEKLLTDYTNESPKENDIHLKGIFKSEFLSLNGDSDEDCGFGDDRKEDIFDGRSDSEDEIPILDRLKRDEEPGQEDTDKDNKDSGKGKNLNGQCETELKENCKETILDESEEESKVKQKKRVRKKKNSDVEIKNERRKEPCAECGKVLFRYKMENHMRTHTKEKPYGCEKCGAHFTERSNLSRHLKIHGNERPYKCATCGKGFLRPSSRAIHEVSVHTTEKSVLCPICGKGFKHHYFLRKHMSNIHETQEKVTIEGAGYPCPICGNFYRTKSSLTVHRRKHEQSKAFLCNICGKGYTTKAVLENHQKVHTGEKNFNCDICNKKFRYITSLKTHVMVHSGEKPLSCPTCNKQFRQHSHLNTHIRGQHSADRPYQCSYCSKTFKHNCNLTVHTRIHTGETPYVCDICHKGFYDSSSMKKHRKGHFEKDNGAAIDWNKVEVTVKLEDINLQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -