Ppla005584.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philopedon plagiatum
Gene Symbol
-
Assembly
GCA_963971165.1
Location
OZ020189.1:3238833-3259497[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 6.7 1.3e+03 2.6 2.5 1 23 393 415 393 415 0.95
2 12 0.00029 0.057 16.3 0.2 2 23 496 518 495 518 0.92
3 12 0.00025 0.048 16.5 3.3 1 23 524 546 524 546 0.97
4 12 7.1e-05 0.014 18.2 2.4 1 23 556 579 556 579 0.94
5 12 6e-06 0.0012 21.6 3.6 1 23 584 606 584 606 0.97
6 12 2.8e-05 0.0054 19.5 1.5 1 23 612 634 612 634 0.98
7 12 2.6e-05 0.0051 19.6 0.5 1 23 640 662 640 662 0.98
8 12 2.1e-07 4.2e-05 26.1 1.1 1 23 668 690 668 690 0.99
9 12 9.3e-05 0.018 17.8 1.1 1 23 696 718 696 718 0.98
10 12 0.074 14 8.7 7.0 1 23 724 746 724 746 0.98
11 12 0.0035 0.68 12.9 5.0 1 23 752 774 752 774 0.99
12 12 2.1e-07 4e-05 26.2 1.4 1 23 780 802 780 802 0.98

Sequence Information

Coding Sequence
ATGGAGTCAGGAAGTTTATTATCAGATTCATATTTTTGCAGGCTTTGTTgcgaagaaaataaaaacggaATAAGTTTATTTAccgacaaaaaaaattctgaagatTTGGGGAATTTGGTAAATAGATACTTGCCGATTAAGGTCGATACTGACGACGCTTTTCCAAAATTAATATGTCCTGGTTGTCACATACAGCTCGAAGCTGCCAGACTGTTTATGGACCTGATAATCGAAGGGCAGGCCAAGTTACGAGACTTATTAAAAGCGCAACAGAAACGTTTCGAGAAAGAAAGCAAACTAGTACAACAGTTTCAGGAAGAATTGCATAATCGCAATCCGAATGCAAATGTAGAGACGTATACTGTCCAGACAGATGAAGATGGggaaaaatttattatacaaatttacagtGGAGGCCCACTCTTTTTACCGGAACATGAATTGGCCTTGAAAGCTCAAGGAAAGCCCAAGAAAAAGCGTGGTCGACCGCCAAAACCCACGACAGACCCTGAACCTGAGCACACTGATCCAAACCCTGAGGCACAagaaaaagatgaaaatacaTCCAAATCGGAATCTGAAGATATAGTGATAGAAGAAACCACCATTATGGCAGAATTTGAAGGGGGAAGAACGAGACGAAAAATTAAGGCCCCAGCTAGATATGAAGGAGCTGTACAaGGCAAAGAACTGGATAAAATCCTAGAAAAGGAAGGAATACTAGACAAAGATGCGGTAGATTCAAAGAAAGGAGGACAGAATGATGAAGTAGATATGCAAGAAGGCAACGAAGAAGAGACGCCTATCGGAATAGTTACGACTGATGATGGATGGGAAGATACTGTGTATTGTAGAAGGAGAAGGCCTAGTGGAAAAAAATATCGCGATATAAGTAGCTTTAGGATACCTCATGGCATAGGAAAATTTGAGGCCAGCGTAGACGGCTGTGATCTGCTTGCCGAACATTGCCGAAAGAAAGCAGTGTTAGACAGGGTTGCCACCGCTTCATTGCATCCTGGCGTAACGGCACTTACTGCTGCGCGAGACAAACACAATTTGTTTCTGTCTCGTGTGCTGCGCGAGACAGAGACAAATTGTTTCTGTCTCGCGCAGGACATCGATAACGTAATATTCGTCTCTATTATCTATTTAAAAGGTCGCAAACAAAAGCAACAGTACACCTGCGATATATGTAAGATACAATATCTCCACCTCGGCAGATTCTTGCTACACAGAAAGACTCACAAGGTAAAGTACGCCTGTCAAGGAAAAAAAGGAAGCGTTTGCAACTTTAAAAAGTGGGACAAAAATCTAGTTTTGGAGCATCAGAAAGAGACGGAGCACGTCGGTATCTCGATGGTTGAAGAGCTATGTCAATATgaTGGCACAGTGATTCTCCCAGGCCCCGATAAACCCTCAGATGCCGTCAGCAATCCAAAAGAGTCTCCCGAAAATGCGCCTGAAATCTCCGAGGAAAAGCCAGTTAAATGTCCAACGTGCAATAAAAGTTACGCTTCTAAACAAAACTATGAGGTCCATCTTACAGCGATACACGATGGCAAGAAGCCCCATAAGTGTCGCAAGTGCCCCAGGGCATATGCCTATTCCTCCAGCCTGAAAAACCACATGTTCTCCCACAAAGCCAAAGAAAAGGGCGTATCGGATTTCCTTTGTGATAAATGTGATAAAACTTTCAATCATCCCAGCAGTTTAATATATCACAAGAGTACCGAGCACGGAAATCGGAGaTACGTTTGTAACAAATGCAACAAATCGTTCAAACACCGTCAACTGTTGCAACGACATCAGATCGCCCACACCGAAGAGAGGCCGTTCAAGTGTTCGGAATGTTCGACGGCGTTTAAGACGAAAACTAACCTGGTCAACCATGAGAATTCCCATAGGGGAGTGAAGAAATTTACCTGCGCTATTTGTGGACAAGGCTTCGGGCATAAAACTTCGTTGTCTGTGCACATGAGATGGCACGAAGGTGACAAACCTTACAAGTGCGACGTATGCAAAAAAGCATTCTCACAAAAGGGAAATCTGAAGGAGCACACGCGTATCCACACAGGGGAGAGGCCGTTCACCTGCGATCTGTGTGATGCCAGCTTCATCACTTCTTCGCAGATGAGAATGCACACCAAACGTCATACAGgTGAGAAACCCCACACCTGCGAATACTGTCAAAAACGTTTTCTACACAAGGAAACGTTCGACACTCACATACGGAGACACCTGGACATCCGTCCCTTTAAGTGCACGTACTGCACGAAGAAGTTCTCGGAGTCGTGGGCTTGCACCAGACATCAGAGGATACATTTGGGAGATAAGCGGTATCGTTGCGTAATTTGCGACAAATCCTTTACGGATGCCTCGAACTTTCGtaaacatacaaaaatacatcagaAAAACGACATAAAATCTGCAAGTTTAGACGGTGACGCCCAGAACAGTAAAAATGCTCAATTTCAGCAACCAGCTcctattcatatttttatttcttctgaCTCGACTGATGCTGAAACTGAAGCAGCAACTCAGGAAAAAGCTAGAGCTGAGCTTAAGAAGTCGAACAACCTCCAGATTCAGGAACTATTGGACGCCGAAGGGAACCTAATCCGTTTGACGACAGCCGATGGTCAGCCCATCCCTATAGTTTCGTCGGACCGTGAAAAAATTCAAGGCTTGATGCCCGACGGCACCTTAGTCAGTTTCGACATCCTCACAGCAGCGGAACAGAATAAAGGGCAACAGAACGAACAAGCACAGGAGGCCCCTAACCAAGAAATGAATCTTATAAATACGGAAATCCAATTCATGGAGGAAAATTCCATTTCCACCACTAGTGTAGAAAAGCCGGCGTTCCTCTCTGAAGACGGAAAAGTTTGTTTCATAACGTCGTTCGATGAAAATTCTTTCTTAACTATGAGTTAA
Protein Sequence
MESGSLLSDSYFCRLCCEENKNGISLFTDKKNSEDLGNLVNRYLPIKVDTDDAFPKLICPGCHIQLEAARLFMDLIIEGQAKLRDLLKAQQKRFEKESKLVQQFQEELHNRNPNANVETYTVQTDEDGEKFIIQIYSGGPLFLPEHELALKAQGKPKKKRGRPPKPTTDPEPEHTDPNPEAQEKDENTSKSESEDIVIEETTIMAEFEGGRTRRKIKAPARYEGAVQGKELDKILEKEGILDKDAVDSKKGGQNDEVDMQEGNEEETPIGIVTTDDGWEDTVYCRRRRPSGKKYRDISSFRIPHGIGKFEASVDGCDLLAEHCRKKAVLDRVATASLHPGVTALTAARDKHNLFLSRVLRETETNCFCLAQDIDNVIFVSIIYLKGRKQKQQYTCDICKIQYLHLGRFLLHRKTHKVKYACQGKKGSVCNFKKWDKNLVLEHQKETEHVGISMVEELCQYDGTVILPGPDKPSDAVSNPKESPENAPEISEEKPVKCPTCNKSYASKQNYEVHLTAIHDGKKPHKCRKCPRAYAYSSSLKNHMFSHKAKEKGVSDFLCDKCDKTFNHPSSLIYHKSTEHGNRRYVCNKCNKSFKHRQLLQRHQIAHTEERPFKCSECSTAFKTKTNLVNHENSHRGVKKFTCAICGQGFGHKTSLSVHMRWHEGDKPYKCDVCKKAFSQKGNLKEHTRIHTGERPFTCDLCDASFITSSQMRMHTKRHTGEKPHTCEYCQKRFLHKETFDTHIRRHLDIRPFKCTYCTKKFSESWACTRHQRIHLGDKRYRCVICDKSFTDASNFRKHTKIHQKNDIKSASLDGDAQNSKNAQFQQPAPIHIFISSDSTDAETEAATQEKARAELKKSNNLQIQELLDAEGNLIRLTTADGQPIPIVSSDREKIQGLMPDGTLVSFDILTAAEQNKGQQNEQAQEAPNQEMNLINTEIQFMEENSISTTSVEKPAFLSEDGKVCFITSFDENSFLTMS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-