Basic Information

Insect: Philopedon plagiatum
Gene Symbol: -
Assembly: GCA_963971165.1
Location: OZ020189.1:24258998-24277022[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0024 0.47 13.4 3.3 1 20 162 181 162 183 0.95

2 14 0.021 4 10.4 7.6 1 23 273 295 273 295 0.95

3 14 1.8e-05 0.0034 20.1 0.4 1 23 301 323 301 323 0.95

4 14 4.7e-06 0.00091 21.9 1.2 1 23 329 351 329 351 0.99

5 14 2.5e-06 0.00049 22.8 2.4 1 23 357 379 357 379 0.99

6 14 5.7e-05 0.011 18.5 2.7 1 23 385 407 385 407 0.99

7 14 0.0062 1.2 12.1 2.8 3 22 415 434 413 435 0.91

8 14 4.7e-05 0.0091 18.8 4.0 1 23 458 480 458 480 0.98

9 14 8.9e-06 0.0017 21.0 0.6 1 23 486 508 486 508 0.96

10 14 0.0034 0.66 12.9 0.2 1 23 514 536 514 536 0.98

11 14 0.0018 0.34 13.8 6.2 1 23 542 564 542 564 0.97

12 14 6e-07 0.00012 24.7 4.3 1 23 570 592 570 592 0.98

13 14 0.044 8.5 9.4 6.9 1 23 598 620 598 620 0.98

14 14 2.9e-05 0.0057 19.4 1.9 1 23 626 649 626 649 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0024	0.47	13.4	3.3	1	20	162	181	162	183	0.95
2	14	0.021	4	10.4	7.6	1	23	273	295	273	295	0.95
3	14	1.8e-05	0.0034	20.1	0.4	1	23	301	323	301	323	0.95
4	14	4.7e-06	0.00091	21.9	1.2	1	23	329	351	329	351	0.99
5	14	2.5e-06	0.00049	22.8	2.4	1	23	357	379	357	379	0.99
6	14	5.7e-05	0.011	18.5	2.7	1	23	385	407	385	407	0.99
7	14	0.0062	1.2	12.1	2.8	3	22	415	434	413	435	0.91
8	14	4.7e-05	0.0091	18.8	4.0	1	23	458	480	458	480	0.98
9	14	8.9e-06	0.0017	21.0	0.6	1	23	486	508	486	508	0.96
10	14	0.0034	0.66	12.9	0.2	1	23	514	536	514	536	0.98
11	14	0.0018	0.34	13.8	6.2	1	23	542	564	542	564	0.97
12	14	6e-07	0.00012	24.7	4.3	1	23	570	592	570	592	0.98
13	14	0.044	8.5	9.4	6.9	1	23	598	620	598	620	0.98
14	14	2.9e-05	0.0057	19.4	1.9	1	23	626	649	626	649	0.98

Sequence Information

Coding Sequence: ATGACCTCTTTTATTGTACAGAACAAAATTTTGTCTGATAGTCAGCTTGGCTTTCAGGAGGGTAAAAGCACACAGGACGCTGTCTTTAGATTGTTAGAGAGTTTATATTCTCGGATACACGGAGGAGGGGTCGCTGCTGCAGTTTTCTGTGACCTGTCAAAAGCATTTGACTGTatatcagAGCATGATGgtttaccagaaaatatttgtacaaattgtGAAGTCCAGGTTGCTTCtcttataaaatttcaaaaaacatgtgaaGATTCAAATTCTGCTCTAAtcaaattatcaaaaagtattAAGGAAGAAGCTGGGCTTGAGAAACTAAATGATATACATTTTGAAACTAAACAAGAAGAAAGTGATGGAGATCTGCTTTTAGTTACAAAAGTTGAATTTCTTAATGAGACTGAAGATGATAACAAAGATAAAAGAGAAGGCAAAGTTTCCAAAAAAGGCAGAACTTTAAAATCCCTTAAATATACATGTGAAGTTTGTAGCAAGTCatacaaattaaagaaaaacttattAAAGCATAAATGCTTAAAATCTGAAGAAGTCTCAAGTGAAACACCAAGTGAGACAAGAAGACCCAGTAGGCCTGGATTACGTGAAGGAAAGCCAAGTAATACTACAAATAGAATTTCTGACAATgagaatgTCAAAAAAGATCCTCCTGGAGACAGGACAGATGTAGATGAAATAATTGACAATAAGGCAGATAACGGTTCTGGTGATAATTATTCTGCTCAGgGCGATTTTAATGATGATTTTTCGAACCATGACTCCTCGGATGGCGATTTTAAATTGGAACACAAATGCAAAATATGTGGAAAatcctttaaatttaaaactttacttgACTGTCACAAACAGACCCATTCAGCAGATAGGCCTTTCTTGTGTAATATGTGTGGAAAGGGATATGCTAATAAGTATGGTCttaaaagtcatttaaaaattcattcagaagaTCGACCATATAAGTGCAAATTTTGTGGCACACGCTTTAGGACACAAGCAGCCGTTCGAGTTCATGTTAGAACACACACAAGAGAACGACCGTATAAATGTCGACATTGTTCCAAACCGTTTGCTCAAAAAGGTAATTTGCAACAGCATGAAAGAGTGCACACTGGAGAAAAGCCATATGAGTGTTCACTGTGTGTGAAAAAGTTTAATCACAGCGGTAAATTAAAAGTTCACCTAAGATCACACACTGGCGAGAAACCTTTCGGTTGTTCTTTCTGTGACAACTGTTTTGCAAGAAAAGAAACACTGAAGAAACATATATGGACGCATACAGGCGAACGACCGCCTAAATATAAAGCAAAACCAAGAGGAGACACTAGTCATATCATTCCCAGTTATGAGTGTGATGTGTGTCATAAAATGTTCAAGTTTCCTGGCAGTCTAAAAGCACACAGACATAGACATACCAATGATAAACCTTTCCTGTGCAATACTTGTGGAAAAGCATTCTCAGGAAAGCccaattttaaagttcatttaaaTACTCACACagGAGAAAAACCTTTCGAATGTGTGATTTGTGCTGCCAAATTTACAGCGTCAACTGGGCTTAAATCACATTTAAGACGCCACGCGGGAGAGAAGCCGTATAAATGTGATATTTGTAATAAGAACTTTTCTCAGTCGAATCATTTGATTTGTCACAAGCGTTTACATACAGGAGAGAAGCCATATAATTGTACCTTGTGCTCAAAGAAgtTTGTCACTAGCAGTCACTTAAAAATCCATATGCGAACGCACAGCGGTGAAAAACCATACAGTTGTCCACATTGCAGTGAAAGTTTTGGACGGAAACATGTTCTAACGTGCCATTTAAGAAGGCATACTGGAGAAAAGCCGTACACGTGCAAAATATGTCGCCAGTCATATTCACAAAGTGGAACTCTGTATACTCATATAAAAACTCAGCATAAAAATAAGGGTCATGACCTATCAGCATTGGAATGTTAG
Protein Sequence: MTSFIVQNKILSDSQLGFQEGKSTQDAVFRLLESLYSRIHGGGVAAAVFCDLSKAFDCISEHDGLPENICTNCEVQVASLIKFQKTCEDSNSALIKLSKSIKEEAGLEKLNDIHFETKQEESDGDLLLVTKVEFLNETEDDNKDKREGKVSKKGRTLKSLKYTCEVCSKSYKLKKNLLKHKCLKSEEVSSETPSETRRPSRPGLREGKPSNTTNRISDNENVKKDPPGDRTDVDEIIDNKADNGSGDNYSAQGDFNDDFSNHDSSDGDFKLEHKCKICGKSFKFKTLLDCHKQTHSADRPFLCNMCGKGYANKYGLKSHLKIHSEDRPYKCKFCGTRFRTQAAVRVHVRTHTRERPYKCRHCSKPFAQKGNLQQHERVHTGEKPYECSLCVKKFNHSGKLKVHLRSHTGEKPFGCSFCDNCFARKETLKKHIWTHTGERPPKYKAKPRGDTSHIIPSYECDVCHKMFKFPGSLKAHRHRHTNDKPFLCNTCGKAFSGKPNFKVHLNTHTGEKPFECVICAAKFTASTGLKSHLRRHAGEKPYKCDICNKNFSQSNHLICHKRLHTGEKPYNCTLCSKKFVTSSHLKIHMRTHSGEKPYSCPHCSESFGRKHVLTCHLRRHTGEKPYTCKICRQSYSQSGTLYTHIKTQHKNKGHDLSALEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -