Basic Information

Insect: Philopedon plagiatum
Gene Symbol: -
Assembly: GCA_963971165.1
Location: OZ020194.1:83909456-83912527[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0024 0.47 13.4 1.7 1 23 13 36 13 36 0.94

2 17 0.00022 0.043 16.6 0.5 1 23 41 64 41 64 0.96

3 17 1e-05 0.002 20.8 0.7 2 23 74 96 74 96 0.96

4 17 2.7 5.2e+02 3.8 1.8 2 21 103 124 102 126 0.86

5 17 0.00017 0.034 17.0 1.8 1 23 133 155 133 155 0.98

6 17 2.7e-06 0.00053 22.7 2.2 1 23 162 184 162 184 0.99

7 17 0.0069 1.3 12.0 0.1 3 23 192 212 190 212 0.91

8 17 0.00021 0.041 16.7 1.4 1 23 218 241 218 241 0.95

9 17 0.17 34 7.5 0.4 2 23 262 282 261 282 0.94

10 17 0.0023 0.45 13.4 1.2 1 23 287 310 287 310 0.96

11 17 0.00021 0.041 16.7 0.5 1 23 315 338 315 338 0.96

12 17 1e-05 0.002 20.8 0.7 2 23 348 370 348 370 0.96

13 17 0.16 31 7.7 2.2 2 23 377 400 376 400 0.90

14 17 0.00012 0.023 17.5 1.6 1 23 407 429 407 429 0.98

15 17 0.00016 0.031 17.1 4.6 1 23 438 460 438 460 0.99

16 17 0.0042 0.82 12.6 0.2 1 23 466 488 466 488 0.96

17 17 2.2e-05 0.0043 19.8 1.6 1 23 494 517 494 517 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0024	0.47	13.4	1.7	1	23	13	36	13	36	0.94
2	17	0.00022	0.043	16.6	0.5	1	23	41	64	41	64	0.96
3	17	1e-05	0.002	20.8	0.7	2	23	74	96	74	96	0.96
4	17	2.7	5.2e+02	3.8	1.8	2	21	103	124	102	126	0.86
5	17	0.00017	0.034	17.0	1.8	1	23	133	155	133	155	0.98
6	17	2.7e-06	0.00053	22.7	2.2	1	23	162	184	162	184	0.99
7	17	0.0069	1.3	12.0	0.1	3	23	192	212	190	212	0.91
8	17	0.00021	0.041	16.7	1.4	1	23	218	241	218	241	0.95
9	17	0.17	34	7.5	0.4	2	23	262	282	261	282	0.94
10	17	0.0023	0.45	13.4	1.2	1	23	287	310	287	310	0.96
11	17	0.00021	0.041	16.7	0.5	1	23	315	338	315	338	0.96
12	17	1e-05	0.002	20.8	0.7	2	23	348	370	348	370	0.96
13	17	0.16	31	7.7	2.2	2	23	377	400	376	400	0.90
14	17	0.00012	0.023	17.5	1.6	1	23	407	429	407	429	0.98
15	17	0.00016	0.031	17.1	4.6	1	23	438	460	438	460	0.99
16	17	0.0042	0.82	12.6	0.2	1	23	466	488	466	488	0.96
17	17	2.2e-05	0.0043	19.8	1.6	1	23	494	517	494	517	0.96

Sequence Information

Coding Sequence: ATGAACTTGCACCTACGAACTCACAATAAGAAACAGTATCAATGCGAAATATGTGGAAAGAACTTTACAGAGCAGTGTATAATGAAAACACATGTTAGGAATATCCATGAGAAAGTACGTTACCGTTGCGAAGTCTGTGGAAAAGAACTTTCTTCTCGACAGAGCTACGAAAGGCACAAACTTATTCTACacgaaaaagaaaaatgtgtCCTTAAACGTTCCTGTGAAAAATGTGGTAAAAGTTATATGTATCAAAGTCAACTGACAGTTCATTTAAAGAAGGCACATCTTggcgaaaattttattaaatgcaCTGTTAGTGGATGTACAAAAGTATTCAAATGCTCATTGTCGCTGAAGTACCACCTGCCTACCCACCAAGAATATAAACCCACTTTTCCATGTCCAGTCTGCGGCAAAATTCTGCATCACCCTGTATCGTTTAAACGACACAAACGAATTCACGAAGACAAGCCCAAAATGTACACCTGTCATGTGTGTGGTAAAGAGGTTACTTCATCACAAAGTTTGAAATATCATATCAGAACGCACACTGGAGAAAAGCCAATTATCTGCGAGGCGTGTGGCAAGGAATTTAATACACTGACACTGTTAAAAATACACAGTGTAGTACATACTAAGGAGAGAAAACATGTTTGTAAAGTGTGTCAGAAAGCGTTTACGCAAAGAGGACCCCTTAGAGCTCATTTTTTGAAGAATCATCCTTTGGATAAATTCATTGTCAGTGTAAAATTAGAAGTGTTAGAAGAATCAGTACCTTCTAGTTGTCAAAAATGTGGTAAAACCGTACCAGTTGGCAAAATGAATTCGCACCTACGAACTCACAATAAAAAACAGTATCCATGCGAAATATGTGGAAAGAACTTTACAGAGCGGTGTATAATGAAAACCCATATTAGGAATATCCATGAGAATGTACGCTACCGCTGCGAAGTCTGCGGAAAAGAACTTTCTTCACGACAAAGCTACGAAAGGCACAAACTTGTTctacatgaaaaagaaaaatgtgtCCTTAAACGTTCCTGTGAAAAATGTGGTAAAAGTTATATGTATCAAAGTCAACTGACAGTTCATTTAAAGAAGGCACATCTTGGCGAAGGTTTTATTAAATGCACTGTAACTGGATGTACAAAAGTATTCAAATGCTCGTCGTCGCTAAAGTACCACCTGCCTACCCACCAAGAATACAAACCCACTTATCCATGTCCAGTCTGCGGCAAAATTCTGCACCACCCTGTATCGTTTAAACGACACAAACGAATTCATGAAGACAAGCCCAAGCCCAAAATGTATACCTGTCATGTGTGTGGTAAAAAGGTTACGTCATCAGAAAGCTTGAAATGTCACATCAGAACACACACTGGAGAAAAACCATTTGTCTGCGAAGCTTGTGGCAAGGAATTTACTAAACTAACAGTGTTAAAAATGCACCGTGTTGTACACACTAGGGAGAGAAAACATGTTTGTAAAGTGTGCCAGAAAACATTTACGCAAAGAGGACCCCTTAAAGCTCATCTTTTGAAGAATCATCCTTTGGATAAGTTGTAG
Protein Sequence: MNLHLRTHNKKQYQCEICGKNFTEQCIMKTHVRNIHEKVRYRCEVCGKELSSRQSYERHKLILHEKEKCVLKRSCEKCGKSYMYQSQLTVHLKKAHLGENFIKCTVSGCTKVFKCSLSLKYHLPTHQEYKPTFPCPVCGKILHHPVSFKRHKRIHEDKPKMYTCHVCGKEVTSSQSLKYHIRTHTGEKPIICEACGKEFNTLTLLKIHSVVHTKERKHVCKVCQKAFTQRGPLRAHFLKNHPLDKFIVSVKLEVLEESVPSSCQKCGKTVPVGKMNSHLRTHNKKQYPCEICGKNFTERCIMKTHIRNIHENVRYRCEVCGKELSSRQSYERHKLVLHEKEKCVLKRSCEKCGKSYMYQSQLTVHLKKAHLGEGFIKCTVTGCTKVFKCSSSLKYHLPTHQEYKPTYPCPVCGKILHHPVSFKRHKRIHEDKPKPKMYTCHVCGKKVTSSESLKCHIRTHTGEKPFVCEACGKEFTKLTVLKMHRVVHTRERKHVCKVCQKTFTQRGPLKAHLLKNHPLDKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -