Ppla014987.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- CAS5
- Assembly
- GCA_963971165.1
- Location
- OZ020189.1:106627353-106668817[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.2e-05 0.0062 19.3 0.6 1 23 71 93 71 93 0.96 2 12 0.0046 0.89 12.5 0.1 1 23 436 459 436 459 0.95 3 12 1.4e-06 0.00026 23.6 4.7 1 23 465 487 465 487 0.97 4 12 4.5e-06 0.00087 22.0 3.2 1 23 493 515 493 515 0.98 5 12 0.00025 0.048 16.5 0.1 2 23 522 544 521 544 0.89 6 12 0.00081 0.16 14.9 0.8 1 23 558 580 558 580 0.97 7 12 0.00014 0.027 17.3 4.6 1 23 586 608 586 608 0.98 8 12 3.3e-06 0.00065 22.4 0.5 1 23 615 637 615 637 0.96 9 12 2.1e-05 0.004 19.9 1.3 1 23 643 665 643 665 0.98 10 12 1.1e-06 0.00022 23.9 0.8 3 23 673 693 671 693 0.96 11 12 9.4e-06 0.0018 21.0 0.1 1 23 699 721 699 721 0.99 12 12 0.088 17 8.5 0.7 1 23 726 749 726 749 0.97
Sequence Information
- Coding Sequence
- ATGGTGAAAGACTATAATCTAAATTCGATGTTTCTTGATCCCCATGATATATCAGAAGAAGAAATTGAAGATATTATTACAAGCCTCGATGCCAAGAAAGCCTGTGGTTTTGATAATATTACagtcaaaatagtaaaaattattaaacacgAAATTGTAGCAGTTGTTAACCATTTAATAAGAATTTCGTTAATGAAAGGAGAAAATGTCCATATTTGCCCAGTTTGCAACAAAGCTTTTAACAGAGAAGATAGCTTAGAAGTTCACAAGCAGCAGCATGACAGAGCACAGTTGTCCCTTCCTACTATTGAAAATTTGGATAATATTGAAGAACACTATTTTCAGGAGAATGTACAGATTGGTTGTTATAGGAGACTCAGGATACCCTCTGGAGCCATGGCTACTTCCCCCGTTGAAAATGCAGACCCCGGAACCCCAGAAGGCAGATATAATCAGTCTTACAAAATAACACGAAGCACTGTGGAAAGATGTATTGGACGCCTAACGTTAGTTTTTCGGTACTATTGTAAAAATGCCTGTGTTGTACTGCATAATATATGCATCGGTGCAGGAGTTGAACATAATATAGTCTTTGATATTCCTTTGCTAGGTATTGATGATGTTGAACATGATCATAATCCAGTTTTAGGAGTAGCTAGGCAAGTTGATTACGATGCCAATATAACTTTCTCTGATAATTCCGACGTTGAGGACTGCTTTGAACCCCAAGTTGAGGTAACCGAAAGTGGTACAGATGCAAAGATTGACATGACAAGTGATGGAGGAGTACATTCGATTGCTGACGACAGTAGCAGTCAGGATTCCATGGGTAAGGgAGAAAGCCAAACTAAAACATTAAAAGATGCGTCAGAAGAGCTCAGCGAATGCATAGAAATTCAACAAGATCAAGATGACGATGATGAAAAACCCCTAGCTGAACTAGCAGCGATTGTCAAGTCAGAAGCGCAGGTAGAATTTCACATCGAGAATGACGATGAAGATGATGACAACGAAAACGACGTCGGTAATATTGATAATGATGGTGACATTCCCAAGGAGACTATAAAAGACAGTGACTACAATTTTGAAAACGATAATGACAATGgAAATGATAGTTCCGTGGATAGCTCTGATGAAGAATATCTGCCACAGAAACTTTCTCAAACGTCACCGAATGGCAAGCGTCGTAGAGGAAGACCGCGTATACATCCGCCCAAACCAAAGGGCCTTGGTCGTAGAGGAAGACCTCCAGGCAGTACTGGCAAGAAACGACCGAAGAtaccagaagaagaagaaattggTGAGTTCCCGTGTCCAGTTTGCAATGAATTCTATGACAGGGTCAGTTTGTTGGATAAACATGCCCGAGATGCCCATCCTGGTCTAAAGgttCACAAGTGCAACATCTGTGGAAAAGACTTCAGTCGCCCTAACCACTTGAAGCGCCATCTAACTTCTCATTCGGAAGAAAAGCCGTTCACTTGCGAGGTTTGTACAAAGAGTTTCGTTCGACGCGATCATCTCATGCAACATCAGAAATTGCACGAACAACAAGAGGAGATGCCATGCGAGATTTGTGAAAAACCCTTCAACAGAGCTGATCAACTGGCAAAGCACAAAGCGGCGAAACATGGAGTTGGAGAAAAAATGATTaTTATGGGAGAAAAGAAATTCCAATGCGAAATCTGCCAGAAAGGCTTCACAACAGAAAAATACCGAGACGTTCATATGAAAGCTCACAATGGCGAGAAGTCGTTCCAGTGTAAAGTGTGCGAAAAAACATTCTTGTCCAAATCCCATCTGACGGAACATATGAAATTCCATAATGAACATTCCAAGAAATTCTTGTGTTCGGAGTGTGGTCAGAGGTTTATACGAAACGATTATTTGGTTATTCATATGAGAAGACACAGAGGAGAGAAACCTTTCAAGTGCAAGTTCTGCGGAAAAGgTTTCCCAAGAACCACAGATCTTACCGTTCACGAAAGGTATCACACCGGTGAAAAAACTCATCTGTGCACTGTGTGTGGTAGGGGATTCGGAAGggCTTACAATTTAACAGTGCACATGAGAACACACACGGGAGAAAAACCATACCAGTGCACGTATTGCGACGCTGCCTTCGCTCAGGGTAATGACCTTAAGGCTCATATCAGGAGACATACGGGTGAAAGGTTCCAGTGTGACTTGTGCACCGAGAGCTTCTTAATGGGATATTTATTGACACAACATAAAAGAACTGTTCACGGTCTTAATGTAGTAAGCAACATTCGACGACTGCAACCCGTTCATAAAACAGAAAATCCAGATGAACCTCCGCCCATCACTATCCCATTACCGAAACCGGTTATACCGGAATCGTTAATGTTTAACCATTTACTGCAACCTTTACAGGCCAAAGAAGAAAAACCGGACGATCCTCCTTCGCTGTCGatgccattttcaaaatccgGGATGCCCGAAAATCTTATGTTTAATCATCTACAGGCACAATTGTCTATATCACAAATGCATTTTACTACTCAGAGGCCCGCAACTTAG
- Protein Sequence
- MVKDYNLNSMFLDPHDISEEEIEDIITSLDAKKACGFDNITVKIVKIIKHEIVAVVNHLIRISLMKGENVHICPVCNKAFNREDSLEVHKQQHDRAQLSLPTIENLDNIEEHYFQENVQIGCYRRLRIPSGAMATSPVENADPGTPEGRYNQSYKITRSTVERCIGRLTLVFRYYCKNACVVLHNICIGAGVEHNIVFDIPLLGIDDVEHDHNPVLGVARQVDYDANITFSDNSDVEDCFEPQVEVTESGTDAKIDMTSDGGVHSIADDSSSQDSMGKGESQTKTLKDASEELSECIEIQQDQDDDDEKPLAELAAIVKSEAQVEFHIENDDEDDDNENDVGNIDNDGDIPKETIKDSDYNFENDNDNGNDSSVDSSDEEYLPQKLSQTSPNGKRRRGRPRIHPPKPKGLGRRGRPPGSTGKKRPKIPEEEEIGEFPCPVCNEFYDRVSLLDKHARDAHPGLKVHKCNICGKDFSRPNHLKRHLTSHSEEKPFTCEVCTKSFVRRDHLMQHQKLHEQQEEMPCEICEKPFNRADQLAKHKAAKHGVGEKMIIMGEKKFQCEICQKGFTTEKYRDVHMKAHNGEKSFQCKVCEKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTVCGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHIRRHTGERFQCDLCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKTENPDEPPPITIPLPKPVIPESLMFNHLLQPLQAKEEKPDDPPSLSMPFSKSGMPENLMFNHLQAQLSISQMHFTTQRPAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -