Basic Information

Insect: Philopedon plagiatum
Gene Symbol: -
Assembly: GCA_963971165.1
Location: OZ020192.1:98364693-98393800[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.5e-06 0.0011 21.7 1.2 2 23 328 349 328 349 0.98

2 12 3e-05 0.0058 19.4 9.2 1 23 355 377 355 377 0.99

3 12 0.00061 0.12 15.3 2.3 1 23 383 405 383 405 0.98

4 12 0.00012 0.023 17.5 2.2 1 23 411 433 411 433 0.97

5 12 0.051 9.9 9.2 3.1 1 23 439 461 439 461 0.95

6 12 6.2e-08 1.2e-05 27.8 3.5 1 23 467 489 467 489 0.98

7 12 4e-05 0.0077 19.0 2.1 1 23 494 516 494 516 0.97

8 12 5.3e-05 0.01 18.6 3.3 1 23 522 544 522 544 0.98

9 12 2.6e-06 0.00051 22.7 0.7 1 23 549 571 549 571 0.98

10 12 6.7e-07 0.00013 24.6 2.0 1 23 577 599 577 599 0.99

11 12 1.3e-06 0.00026 23.6 3.0 1 23 605 627 605 627 0.97

12 12 1.1e-06 0.00021 24.0 0.7 1 23 633 655 633 655 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.5e-06	0.0011	21.7	1.2	2	23	328	349	328	349	0.98
2	12	3e-05	0.0058	19.4	9.2	1	23	355	377	355	377	0.99
3	12	0.00061	0.12	15.3	2.3	1	23	383	405	383	405	0.98
4	12	0.00012	0.023	17.5	2.2	1	23	411	433	411	433	0.97
5	12	0.051	9.9	9.2	3.1	1	23	439	461	439	461	0.95
6	12	6.2e-08	1.2e-05	27.8	3.5	1	23	467	489	467	489	0.98
7	12	4e-05	0.0077	19.0	2.1	1	23	494	516	494	516	0.97
8	12	5.3e-05	0.01	18.6	3.3	1	23	522	544	522	544	0.98
9	12	2.6e-06	0.00051	22.7	0.7	1	23	549	571	549	571	0.98
10	12	6.7e-07	0.00013	24.6	2.0	1	23	577	599	577	599	0.99
11	12	1.3e-06	0.00026	23.6	3.0	1	23	605	627	605	627	0.97
12	12	1.1e-06	0.00021	24.0	0.7	1	23	633	655	633	655	0.98

Sequence Information

Coding Sequence: ATGGAAAACGGAGTAAATTTATCAAATTGTTGTAGAACATGTTTACGTTTAGGTTGCCCCTTAACCCCTATAAATGCTGATGATAAagattcagtaaaatttagttttaaactcACGGTTTGCATAGCTGAAATAGCTTGGTCAAGAATTGATATTCAATCTTTAATTTGTGATCGGTGTATTGAGCAACTTAGAATCTCCTATGATTTTCGAACTACATGTATTACTGCTGACGAAACATTACAAAAATGTGTTAAACAATCTCAAGATAGAAAAATTGAAACTAAAGATAACATTTTATTTCATCCAAAATATATTGATGCTACTACGGGGCATGATAGTATTAACAATTTACCTGATGAAGACACAAGCAATTCAGAATATCTTCaccttaaacattttttggataGTGAAGTGGATTTGGGTAAACATGAAGCAATATTATCTGACAATGAAATGTCACGGAGTAGTACACCTGAAAATACTGCAGGGTCCTTCATAAATACCTATAATCAATCACAAACAATTGAAATTGAGGTAGTACAGGACGTTCAAGAAATTATAATTCAAGCGAAGCCTGAGGAAGAAGAGCaaagtaaattaattttaagtgaTGGAGAAGAATACCATATACAGGATCTTAACACTAACACAGAAAACACAGATGTGGAGACTGCAGAAGAGCAGCAAAACCAGGTTGCAAACCAAAGCAATGCTGAGGAAAGTGAAGAGAGTAGTGAAAAactaaatgaagaaaattacaATGAAGAGGAAGTACCCATCTTGACAGGAAATAAAGATGTTTTGGTCAAATTTGATAAATTGGCAGGTTCATCAGTAGGTGAAAGTATCTTGGGTTCAGATCAAaTATGTCCTATTCCTAAAATGTATATAATAAAGCCAACAAAAAGTACTGGTGTTCAAGTGCGGCCTCCAACTCCTCAAGGTAAACCAACAACAAAGCCTTCAGGCAACCCTAATACTTGTACGATATGTGGGAATACATATAGAAAAAGAGCTAATTTAAAAGTGCATATGAGAAGTCATACTGGGGAAAAACCTTATGAATGTAAATATTGTGAGAAAAGATTTCATCATTCCTCCCATCTCAAAGAACATATTAGACGACATACTGGGGAAAAACCTTTTCATTGTAACATATGTGCAAAAAGGTTTACAATAAGAGGAGAACTCACAATGCATACGCGGTCTCATACTGGAGAAAAACCATTTGCATGTACTGTTTGTGATAGAAGATGTCTAACATCTTCAGATTTAAAAATTCACATGCGGACTCATACTGGAGAAAAGCCTTATACCTGTGAAAATTGTAGTAAAAAGTTTAGCAGTGCCTATATTCTAAGCTGTCACATGAAAATACATACAGGTGAAAGACCATTTCCTTGTAAATTATGTGACAAAAGCTTTACTCAATCATCCCACCTTAACGTACACATGAAAAAACATACTGGAGAGAAATTTGCTTGTAAATTTTGCCCAGCAACTTTTAGTCATTCTTCTCAGCTTACAGTTCACAAGCGAGAGCACACAGgaaaacaaccTTACAAATGTGTCGTCTGCAATAAGTCTTGTAATTATTCTTCAGAATTACAGCTACATATGACTAAGCACACGGGTCAAAAATTCTCCTGCACAATTTGTCAAAAACAGTTTTCTACCGCATCCTATTTAGCAGAACATACACGGGTTCACACAGgTGAAAATCTCTTTACATGTACAGTATGTGATAGGACTTTCACTAGACTGCAGTACTTGGAAAAACATGTTAGAACTCATACAGGGGAAAAGCCATATTGTTGCTTAGATTGTGGAAAAACGTTTAGTCAGACTTCCAGTTTAAAGgtacatACACGAATTCACACTGGCGAAAGACCGTATGCTTGTAATTTGTGCGAGAAAACTTTTATAACGTCTTCGGATTTAACAAGTCACGTAAGGAAACATAAAAAGTACATAGATTTATAA
Protein Sequence: MENGVNLSNCCRTCLRLGCPLTPINADDKDSVKFSFKLTVCIAEIAWSRIDIQSLICDRCIEQLRISYDFRTTCITADETLQKCVKQSQDRKIETKDNILFHPKYIDATTGHDSINNLPDEDTSNSEYLHLKHFLDSEVDLGKHEAILSDNEMSRSSTPENTAGSFINTYNQSQTIEIEVVQDVQEIIIQAKPEEEEQSKLILSDGEEYHIQDLNTNTENTDVETAEEQQNQVANQSNAEESEESSEKLNEENYNEEEVPILTGNKDVLVKFDKLAGSSVGESILGSDQICPIPKMYIIKPTKSTGVQVRPPTPQGKPTTKPSGNPNTCTICGNTYRKRANLKVHMRSHTGEKPYECKYCEKRFHHSSHLKEHIRRHTGEKPFHCNICAKRFTIRGELTMHTRSHTGEKPFACTVCDRRCLTSSDLKIHMRTHTGEKPYTCENCSKKFSSAYILSCHMKIHTGERPFPCKLCDKSFTQSSHLNVHMKKHTGEKFACKFCPATFSHSSQLTVHKREHTGKQPYKCVVCNKSCNYSSELQLHMTKHTGQKFSCTICQKQFSTASYLAEHTRVHTGENLFTCTVCDRTFTRLQYLEKHVRTHTGEKPYCCLDCGKTFSQTSSLKVHTRIHTGERPYACNLCEKTFITSSDLTSHVRKHKKYIDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -