Ppla072799.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- zfh1
- Assembly
- GCA_963971165.1
- Location
- OZ020194.1:84239652-84245793[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.6e-05 0.013 18.3 1.1 1 23 7 29 7 29 0.96 2 19 0.00016 0.031 17.1 0.4 1 23 35 57 35 57 0.96 3 19 0.076 15 8.7 0.2 1 23 61 85 61 85 0.94 4 19 8.7e-05 0.017 17.9 0.6 1 23 91 113 91 113 0.98 5 19 0.00012 0.023 17.5 2.1 1 23 119 142 119 142 0.95 6 19 9.5e-06 0.0018 21.0 0.9 1 23 153 176 153 176 0.94 7 19 4.4e-05 0.0086 18.9 3.6 2 23 185 206 184 206 0.98 8 19 0.13 26 7.9 0.6 1 12 212 223 212 225 0.90 9 19 0.68 1.3e+02 5.7 2.2 2 23 306 327 305 327 0.96 10 19 0.6 1.2e+02 5.8 0.2 1 23 350 372 350 372 0.97 11 19 1.6 3.1e+02 4.5 0.3 1 23 376 398 376 398 0.96 12 19 0.025 4.9 10.2 0.1 1 23 404 427 404 427 0.97 13 19 0.0015 0.29 14.0 3.1 1 19 433 451 433 455 0.90 14 19 0.0077 1.5 11.8 2.5 3 23 463 484 461 484 0.96 15 19 9.4e-05 0.018 17.8 0.3 2 23 496 518 495 518 0.91 16 19 1.1e-05 0.002 20.8 1.2 3 23 532 552 530 552 0.96 17 19 6.3e-05 0.012 18.4 0.8 1 23 558 580 558 580 0.98 18 19 1e-05 0.002 20.8 0.8 1 23 586 608 586 608 0.98 19 19 0.0015 0.28 14.1 0.1 1 21 614 634 614 635 0.96
Sequence Information
- Coding Sequence
- ATGAAATCTCATAGAAATTTTTCGTGTGACAAATGTTCATTAAGCTTTAAAACAAACGAACAACTTACAGATCACCAAGAAGACCATGTCAGCATGGCTCATTTTACTTGTGATATTTGTAATATGGTTTTTAGAACGTTAGACAAATTGGCAGTTCATAAGTTTATACATACTAATCAATATGTGTGTCCTCTATGCGGATTTCAAGCCAAAACTAAGAGCTCAAGCTCAATAAAAGCTCATATTTTACGACATGAAAACAAATATACTTTTCGGTGTGAACTTTgtaacaaaggattttttactAGTGCTAAACTGCGAGATCATCTTGAAGTCCACGAGGGCGTACCTAAATACGAATGCGAAATATGCCACAAGAAATTTGCagttaaaaattacttaaaacttcACATTAGCTACAATCATAAAAAGGAAGTTTATGGTATTGAAGAAATGTTTCAGTGCGAAATTTGCGGCAGGGAATTTACTTTTCAAAAGAGCTTTCAAAGACATTTGAGTGCAATCCACAAAATAGGCAAAGATCTCACCGTGCAGTGCGAAGTATGTCACAAAACTATCGCTAACAACTGTAATCTTAAGAAACATATGAGAATACATACAGGAGAGAAGAATTTTGCCTGCGATACCTGTGGTAAAAGATTTTCTGATATGAAGATTAGTCTCTGTATCAAGCAAGAAGAACTTAACCTAGATTGCgatgaagataataaaaaacCTAGAAGAATGAGAAGAAGAATTGTAATTAAGAAAACTAAAAGAGACCCTGAATGGAAGCTTGAAAACGACACAACTAAAAGAACTAGAAGCGAACCGAAAGATCGAAAAATTCGAATTAAGAAAGAGAAGAAATATACCCCACCAAAACTTCCAAAAAACCAAAAAGCGAATATGTGGACTTGTAAGTTTTGTTTCGATACATTTGCATCCAGAAAACAGATGTTCGAACATAGAAAAGAACATCTTGGAGAAGAGAAACATGGCCAAGGTGAAGTGAAGAAGTACACTTTCGACGAAGAACatgaaatatatatttgtaataCTTGTTCAGCCGAATGTCAAGATCTTGAAGaaatcgagaaacacgtggcgaCTCACGAGGAAAAGTTCAGTTGCTACGTATGTAAAGAGGACATCTTTGGTCCAATGAACTTTACGGTGCATGTGCAGAAACACAGAGACGACAAGCTGTTTCCATGCCCTTGGTGTCAATATATGTCTCAGAAAAAGGAAGCCATGCAAGTGCATATCAACCGGCTGCATCTCCAGATCTACGACTTCCAATGCACTAAGTGTGGAAAGTGCTTCAACGACGCCTTAAGCTTCAAAGAGCATGATAACGTTCATCTAAATATAAAGCCTTTCGGTTGCGTTGTTTGCAACAAGCATTTCTACTATTCTAGGTATCTACTCTCCCATCAAATGCGCACTCATACTGTAAGAGTATTAGATCCAGAGTCAAAGACTCAATGTAACATATGCCAGAAGATTTTCGCAAGGTTGGATACCTTGGAGAAACACTATGCGGCCAAGCATTTGACAGTGCGGACTGGTCCGTATGAAAAAAAGCATTTGTGCGACGTATGTGGTCAAGGCTTCTCTAGACCGGATAAGTTGAAAATTCACTACAGGAAACATACAGGAGAAAAGCCGTACTCTTGCGTATATTGTAGCAAAAGTTTTATCAAACGTGATTATCTAATTATGCACGAACGAATTCATTCAGGTGAAAAGCCTTACAGTTGCTCAATTTGCGGAAAATGCTTCAATCAAGGTGCTCCCCTGAGGATTCATTTGCGAAGCCACACAGGGGAAAGGCCCTACGTTTGCCCTTATTGTGGTAGCGGGTGTGTTTCCAGGGGAGCTCTCAATAGTCATATTAAGAGCTGCATTAACACTGCCCAAACATTTGTCAGCTAA
- Protein Sequence
- MKSHRNFSCDKCSLSFKTNEQLTDHQEDHVSMAHFTCDICNMVFRTLDKLAVHKFIHTNQYVCPLCGFQAKTKSSSSIKAHILRHENKYTFRCELCNKGFFTSAKLRDHLEVHEGVPKYECEICHKKFAVKNYLKLHISYNHKKEVYGIEEMFQCEICGREFTFQKSFQRHLSAIHKIGKDLTVQCEVCHKTIANNCNLKKHMRIHTGEKNFACDTCGKRFSDMKISLCIKQEELNLDCDEDNKKPRRMRRRIVIKKTKRDPEWKLENDTTKRTRSEPKDRKIRIKKEKKYTPPKLPKNQKANMWTCKFCFDTFASRKQMFEHRKEHLGEEKHGQGEVKKYTFDEEHEIYICNTCSAECQDLEEIEKHVATHEEKFSCYVCKEDIFGPMNFTVHVQKHRDDKLFPCPWCQYMSQKKEAMQVHINRLHLQIYDFQCTKCGKCFNDALSFKEHDNVHLNIKPFGCVVCNKHFYYSRYLLSHQMRTHTVRVLDPESKTQCNICQKIFARLDTLEKHYAAKHLTVRTGPYEKKHLCDVCGQGFSRPDKLKIHYRKHTGEKPYSCVYCSKSFIKRDYLIMHERIHSGEKPYSCSICGKCFNQGAPLRIHLRSHTGERPYVCPYCGSGCVSRGALNSHIKSCINTAQTFVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -