Ppla072828.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- ZFY
- Assembly
- GCA_963971165.1
- Location
- OZ020194.1:84487644-84492903[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.1e-05 0.0021 20.8 0.1 1 23 172 194 172 194 0.94 2 17 0.00013 0.026 17.3 2.8 1 23 200 222 200 223 0.96 3 17 2.6e-05 0.0051 19.6 3.6 1 23 231 252 231 252 0.98 4 17 8.8e-06 0.0017 21.1 0.5 1 23 266 288 266 288 0.95 5 17 0.00038 0.075 15.9 0.6 2 22 298 318 297 318 0.96 6 17 0.0031 0.61 13.0 0.2 1 23 328 350 328 350 0.97 7 17 0.064 12 8.9 1.4 3 23 358 378 356 378 0.80 8 17 0.00053 0.1 15.5 1.3 1 21 384 404 384 405 0.94 9 17 3.9e-06 0.00075 22.2 0.1 1 23 485 507 485 507 0.95 10 17 0.00056 0.11 15.4 2.0 1 23 513 536 513 536 0.96 11 17 0.00016 0.031 17.1 4.4 2 23 545 565 544 565 0.96 12 17 0.00024 0.046 16.6 1.0 1 23 579 601 579 601 0.94 13 17 0.0022 0.43 13.5 2.4 2 22 611 631 610 631 0.96 14 17 0.00086 0.17 14.8 0.6 1 23 641 663 641 663 0.97 15 17 0.14 27 7.9 1.5 3 23 671 691 669 691 0.94 16 17 3.4e-05 0.0066 19.2 1.6 1 23 697 720 697 720 0.98 17 17 0.028 5.4 10.0 0.3 1 23 726 749 726 749 0.93
Sequence Information
- Coding Sequence
- ATGCAAGATGATGCTCGTCCTCACATTATAGGAGTTGTTACCCTATACTTAGACGACGTAGAAGTACGAAAAATGGACTGGCCACCACGTAGCCCAAACCTTAATCCCATAGAGCATATCTGTGACATAACGGGCAGAAAGATTCGAAGCCGAGTTCTGGTTCCGAGTAACCTGGAAGAATTAAAAGAAGCACTAACCCAAGAATGGGatcaaattaatcaaaatcagATTCGACCAGTCAAAGAATGCCAAGGCGTATGGAGGCAtttaCTGTGTTTTGTGGATATTAACTGCGCTGCAGGAAGAGTCAAGCAGGAGAAATACGATAATTATTTGTTCCAAGATCCTGCAACTGATATCACGgtcgaaaaaagtaaaattacaattaAATATGATAACATATTTAATGAAGCTAGTCATAAAGATGACAATAGAGAAAATGGATGTACATGTATCATGTGTCATTCAAATAGTaataatttgattaaaaaagaAGAAGACGATGAACCCCTTTTTCTTTGCCCTATTTGTGGGGAACGTTTTCCCTATCAATGGCTTTTAAAAAAGCATATGGTAGTACACAGTGAAGATCGGCCTTTCGAATGTCCaacatgttttaaaaagtttaaaggaAAAGGTGGCTTGCGAATGCATGTTAGAAAACATCATGGAGATggaaaaagaaatttatattcCTGTCAAATATGTTCAAAGTCTTTCGACGTATCACATCTAAAAAAACATATGAAAATGCACAACGGAGAGTATGTTCCGTATAGTGAAAGACAGCGCAATTTTTTATGTTCAATATGCGGAAAAGCATATGTAGATAGATCTCGATTGCGTGATCACATGAAATCTCATGAGCCAAAAGACCAAGGGTGCTGTGTAAAATGTGACTACTGCGAGAAAACTTTTGTCGTCGAGAAGAATCAAAGACGTCACATGAAAACGtgtattaaaaattcaaatcggCAGGAGTATATTTGTGATTTGTGTGGAAAAGCAACTGCCTACCTGTCTGCGTTCCGACTACATAAATTAAGTCATGCCGGCACAAAAAACCTGGCATGTGATATCTGTGGAAAGAAGTTTTTGCGTCCGAATATACTGAAACATCACAAATATACTCATACTGGTCTAAAGCCATACCACTGCAAATTTTGTGATAAAGGTTTTAATCAGAGCTCTCCCTTGAAAACCCACGTCAATTTACTGAATTCTGTAAAGACTGACTGCACTGCAGGGAGAGTCAAGCAGGAGGACGATGATGATTGGTTTCAGGATTATGTAACTGATATCGCGGacgaaaaaagtaaaattacgaTAAATAATGACAACATATTGGATGAAAATATTCATAAGGATAATAATACGAAAAATGGATGTACATGTATCATGTGCTATTCAGATAGTAATAATTTTGTGGAAAAAGAAGACGATGAACCCCTTTTTCTTTGTCCTATCTGTGGGAAACGTTTTTCTTATCAATGGGAGTTAGATAAACATATAATAGTGCACAGTGAAGATCGACCATTCGAATGCCCCACATGTTTGAAAAAGTTTAAGAGACCAAAAAGCATGAAATTACATGTTAAAAACTATCATGGAGATGACAAAAGAAAATTATGTTCATGTCAAATATGTTTGAAGTCTTTCGACAAATCCAGTCTTAAAAGACATATGAAGATGCATAACGGAGAGCATGTTCCTTATCGTGAGCGAAAGCGCAATTTTCTATGTTCAATATGTGGAAAGGCATATATAGATAAAACCCATTTCCGTGACCACGTGGATTCTCACGAACCAGAGGATCAAAGGTGTCGTATAAAATGTGACTACTGCGAAAACACCTTTTTTAGGAAAAAGAATCAAAGACGACACATGAAAACgtgtgttaaaaatataaatcggCAGGAGTATATCTGTGATGTGTGTGGAAAAGCAACTGCCCACCTGTCCGCGTTCCGACTACATAAATTACGTCATGCCGGCACAAAAAACCTGGCATGTGATATCTGTGAAAAGAAGTTTTTCAGTCTAGAAATACTGAATCATCACAAATATACTCATACTGGACAAAAGCCGTACCAGTGTAAATTTTGTGATAAAGGTTTTACTCAACGAACTCCTTTGAGTACCCACATTAAGTCTATGCATTCAAAGGACAGACCTTTTTTATGCAGTATTTGCGACGTAGGTTTTGCTGATGAGAACTTACTTAACTACCATAAAAGCAAGAAACACTCTGAATCGGCAGATTAg
- Protein Sequence
- MQDDARPHIIGVVTLYLDDVEVRKMDWPPRSPNLNPIEHICDITGRKIRSRVLVPSNLEELKEALTQEWDQINQNQIRPVKECQGVWRHLLCFVDINCAAGRVKQEKYDNYLFQDPATDITVEKSKITIKYDNIFNEASHKDDNRENGCTCIMCHSNSNNLIKKEEDDEPLFLCPICGERFPYQWLLKKHMVVHSEDRPFECPTCFKKFKGKGGLRMHVRKHHGDGKRNLYSCQICSKSFDVSHLKKHMKMHNGEYVPYSERQRNFLCSICGKAYVDRSRLRDHMKSHEPKDQGCCVKCDYCEKTFVVEKNQRRHMKTCIKNSNRQEYICDLCGKATAYLSAFRLHKLSHAGTKNLACDICGKKFLRPNILKHHKYTHTGLKPYHCKFCDKGFNQSSPLKTHVNLLNSVKTDCTAGRVKQEDDDDWFQDYVTDIADEKSKITINNDNILDENIHKDNNTKNGCTCIMCYSDSNNFVEKEDDEPLFLCPICGKRFSYQWELDKHIIVHSEDRPFECPTCLKKFKRPKSMKLHVKNYHGDDKRKLCSCQICLKSFDKSSLKRHMKMHNGEHVPYRERKRNFLCSICGKAYIDKTHFRDHVDSHEPEDQRCRIKCDYCENTFFRKKNQRRHMKTCVKNINRQEYICDVCGKATAHLSAFRLHKLRHAGTKNLACDICEKKFFSLEILNHHKYTHTGQKPYQCKFCDKGFTQRTPLSTHIKSMHSKDRPFLCSICDVGFADENLLNYHKSKKHSESAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -