Ppla072791.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- ZFY_1
- Assembly
- GCA_963971165.1
- Location
- OZ020194.1:84156995-84160541[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00011 0.021 17.7 1.0 2 22 11 31 10 34 0.89 2 20 0.00033 0.063 16.1 0.3 3 23 64 85 62 85 0.94 3 20 4.5e-05 0.0088 18.8 0.6 1 23 91 113 91 113 0.95 4 20 0.064 12 8.9 1.6 2 23 119 140 118 140 0.97 5 20 0.065 13 8.9 1.5 2 23 147 169 147 169 0.97 6 20 0.00021 0.041 16.7 1.4 3 23 175 195 174 195 0.98 7 20 1.9e-06 0.00037 23.1 3.4 1 23 204 227 204 227 0.95 8 20 0.12 23 8.1 3.2 1 23 234 256 234 256 0.95 9 20 4.3e-06 0.00084 22.0 2.0 2 23 263 284 262 284 0.97 10 20 4.2e-06 0.00081 22.1 0.4 1 23 290 313 290 313 0.95 11 20 5.1e-05 0.0099 18.7 2.6 2 23 365 386 364 386 0.96 12 20 9.1e-05 0.018 17.9 2.5 1 23 392 415 392 415 0.94 13 20 0.015 3 10.9 1.4 1 23 422 444 422 444 0.98 14 20 0.0019 0.37 13.7 1.0 2 23 451 473 451 473 0.95 15 20 0.00014 0.027 17.3 0.6 1 23 478 500 478 500 0.97 16 20 0.0072 1.4 11.9 2.5 2 23 511 533 510 533 0.93 17 20 8.3e-05 0.016 18.0 0.6 1 23 540 562 540 562 0.97 18 20 1.7e-06 0.00034 23.3 0.7 2 23 569 590 568 590 0.97 19 20 1.8e-07 3.5e-05 26.4 0.8 1 23 596 618 596 618 0.98 20 20 0.014 2.7 11.0 0.7 1 23 624 647 624 647 0.97
Sequence Information
- Coding Sequence
- ATGTTGGATCCTTCAATAACTTATCCACTTTCTTGTACTGTATGCTTTACAACATTTGCTACGTGGGATAATCTACAAAAGCACAGAGAAAAATTCCAGCATACTGAGGAATATTTTCCTTACACAACGGATCCCAATCCTTCTTTTATTAAGGTTGAGCAAGAACTAGTTAAAACTGAAATTACTTTTTGTGATTTATGCCAGAAGGTATTTCCTACCGCAAGTCGACTGAGAATGCACATTAAAGGCGTACATGTTGAGGGTCGTCCCTACCTGTGCTCCATTTGTTCAaaaggctttaaaacaaataccGCGTTGACACAACATTTGGGAACTCACACAGAATCCCAATTGCAGTGCGACgtgtgtttaaaatatttaaaaaataaaaacacttttgacctACACATGAAAAGACATAACAACGAATATATGGCCAAATGTGAACTGTGCGATGTCAAGTTTATTTCAGTGCGTGAAGTAAAACATCACGTCAAAATGAAGCACGGTGAAAAAATTTTGTGTTCGTTTTGTGGAAAAGAATTCTCTAgcaaaaatactttggattatcaCATGAAATATCATGATCCCAATTTTATAAGAGGTTCTTTCAAATGCGAGCACTGTGATAAAGTATTTGATCAGAGAAGAAATCTTAGGCGACACACACAAGCTCAGCACAATGATGTCAAAAAGGAATTTTGTTGTGATCTTTGCGGAAGGGTTCTGACTTCGCTAGAAGGTTTTAAACTTCACAAATTACACCATCAAGGAGAAAAGCCGCTTGAATGTAAACAGTGTGGAAGAAGATTCTTAAGAAAATCTACTTTAAAATGGCACATGCGCACTCATACAGGAGAAAAGCCTCATGAGTGTGATTTTTGCGAGCAAGCATTTAGTCAACCGAGTGCCTTAAAAAGACATATGATGGGAGTACATGCATTGAAATGTCCATTTATCTGCGCTATCTGCGAAGATAGTTTTTCTAATAAAACTTCggaCATAAAACCCAACATTAAAGTAGAAGAGTTAGATGCCAATCAGAACCCAAAATCGTCCAAGAAAAGAAGGAAAAAAGgaacaaaaattattagttgtcaattttgtcaaaaagtattttatgACAGTCGCCATTTAAAAAAGCACCTTTTAGTGCACTCAGATGATCGACCGTATAAATGCCCGAATTGTGACAAGTTTTTCAAGAGCCGATATCAAGTTAAAACACACAATGAGCGAGTACACACGGAACGGGAAAAAACGTTTGAATgcgatttttgtttattaaaattaaaatctaaggGATCGCTAACGATTCACAGGAAAAGACACCTCAAGGAGTACGTGGCGAAATGTGAACATTGTAATATTGGATTTGTGACTAATCAAGAGTACATTAATCACATGGGTTCCAAGCACGGCCCAAGCAATCATGTGTGTAACGTGTGTGGTAGAGCTTGTTATGATAAGGCTGCTCTACAGGGTCATATGGCGCGCCATGCAGACGACTACGGAAAAAATTCGACTATTCGTTGTGATATTTGCGACAAGACCTTTTTACAGGAAAAGTACCTGAAGCATCACTTCCTCCGCATGCACCAAAATGGCGGCCAACAATTCATCTGCGATCTTTGCGGCAAAAAAGTTAATTCCAAACGCTCCCTTAGAGACCACATGTATATACACCAAGGTCTTAAACCTTTGGAATGTAAAGAGTGCGGAAAATCCTTTGCTTTAagaacaactttaaagttacACATCAGAACGCACACAGGTCAACGACCTTACGAGTGTACCGTCTGTGGTAAAAGTTTTACTCAAAGGACTCCGTTGACGGTTCACATGAGGTATCATTCTGGAGAGAGACCGTATGAATGTCACTTGTGCGACGACAAGTTCGTCAGTAGAGGTGTTTTGAATTTGCATGTTAAGAAAATTCATGCATGCAATGTTTAA
- Protein Sequence
- MLDPSITYPLSCTVCFTTFATWDNLQKHREKFQHTEEYFPYTTDPNPSFIKVEQELVKTEITFCDLCQKVFPTASRLRMHIKGVHVEGRPYLCSICSKGFKTNTALTQHLGTHTESQLQCDVCLKYLKNKNTFDLHMKRHNNEYMAKCELCDVKFISVREVKHHVKMKHGEKILCSFCGKEFSSKNTLDYHMKYHDPNFIRGSFKCEHCDKVFDQRRNLRRHTQAQHNDVKKEFCCDLCGRVLTSLEGFKLHKLHHQGEKPLECKQCGRRFLRKSTLKWHMRTHTGEKPHECDFCEQAFSQPSALKRHMMGVHALKCPFICAICEDSFSNKTSDIKPNIKVEELDANQNPKSSKKRRKKGTKIISCQFCQKVFYDSRHLKKHLLVHSDDRPYKCPNCDKFFKSRYQVKTHNERVHTEREKTFECDFCLLKLKSKGSLTIHRKRHLKEYVAKCEHCNIGFVTNQEYINHMGSKHGPSNHVCNVCGRACYDKAALQGHMARHADDYGKNSTIRCDICDKTFLQEKYLKHHFLRMHQNGGQQFICDLCGKKVNSKRSLRDHMYIHQGLKPLECKECGKSFALRTTLKLHIRTHTGQRPYECTVCGKSFTQRTPLTVHMRYHSGERPYECHLCDDKFVSRGVLNLHVKKIHACNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -