Ppla072761.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- Zbtb41
- Assembly
- GCA_963971165.1
- Location
- OZ020194.1:83953781-83962481[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 6.7e-06 0.0013 21.4 0.9 1 23 18 41 18 41 0.95 2 22 0.006 1.2 12.1 0.3 2 23 83 105 82 105 0.89 3 22 0.00033 0.064 16.1 0.3 1 23 111 134 111 134 0.95 4 22 2.8e-05 0.0055 19.5 0.6 3 23 142 164 140 164 0.91 5 22 0.00034 0.065 16.1 3.0 1 23 170 192 170 192 0.98 6 22 0.0002 0.038 16.8 1.5 1 23 199 221 199 221 0.99 7 22 4.6e-07 8.8e-05 25.1 0.3 1 23 227 249 227 249 0.97 8 22 0.0054 1.1 12.3 0.4 1 17 255 271 255 272 0.93 9 22 0.0016 0.32 13.9 4.4 1 23 281 303 281 303 0.98 10 22 0.68 1.3e+02 5.7 4.6 1 23 308 331 308 331 0.95 11 22 0.0004 0.078 15.8 0.4 2 23 339 360 338 360 0.96 12 22 5.9 1.1e+03 2.7 0.7 1 14 366 379 366 380 0.91 13 22 0.0019 0.36 13.7 5.0 1 23 435 457 435 457 0.95 14 22 5.3 1e+03 2.9 4.2 3 23 464 485 462 485 0.88 15 22 0.00052 0.1 15.5 0.2 2 23 492 514 491 514 0.94 16 22 1.9e-05 0.0036 20.0 2.1 1 23 520 543 520 543 0.97 17 22 0.0014 0.26 14.2 0.2 1 23 548 570 548 570 0.97 18 22 1.2e-05 0.0023 20.7 0.5 1 23 579 601 579 601 0.97 19 22 5.2e-08 1e-05 28.1 1.2 1 23 608 630 608 630 0.98 20 22 7.2e-08 1.4e-05 27.6 0.8 1 23 636 658 636 658 0.99 21 22 5.3e-06 0.001 21.8 1.9 1 23 664 686 664 686 0.98 22 22 3.8 7.5e+02 3.3 1.3 1 19 692 710 692 711 0.92
Sequence Information
- Coding Sequence
- atgaaaggAACAAGAAGCGGAGCTTTGAATAAGTGTGAAAATAATGGAAGATTTACTTGTGAGCATTGTGGAAAATCGTTTaccagtaatatttttttaaaagagcaTATAGTTGTTGTCCATACTCACGAATTCCGGTACTTTTGTAAATTCTGTGGAAAGGGATTTTACATGGAATGTCGAAAACGGTTTCATGAGAAAAAAGTTCATGAGAAGTTGGTACCGAAAAAGGACAGCGTTCCTTGGTCGTGTGATGAATGCGGCCGAGTGCTGGCCAACAAGTACACCTATAAGCAACATAAATTTTTAGCTCACGAaagagaaataaagtttttttgtgATAAGTGCGGCAAAGGATTTCCACTACTTAGCTACCTCACGCAACACGCGCAGGTTAACCACGCGAGAAACAAGCCTTTAATGTGCTCCGAGGAAAATTGCGGGAAAGTATTTAAAACGAAAGATGCCTTAAGGCGGCACAAATTTATTCACTCAGAGGATCGTGAATTTTCTTGCAGTTTTTGTCCTAAAACTTTTATTCACATTGTGTCGTACAAACGACATCTCCGGGAACATAAAAACGGTAGAAAAGTGTACGAATGTGACGTCTGTCGTAAAATAGTGAGTAGTACTACCAGTCTTCATGATCATATGAGGACTCACACCGGGGAGAAACCTTTTACATGTCCGTATTGCCCAAAAACTTTTGTCTCTAATAAACAGTTAAAGGTGCACATTGTTGTACATACAAAGGAGAAAAAGCATGTTTGTAGAATTTGTGATAAGAGGTTTACTCAGCGGGGAACGCTAAAgtacgTGATACAAGAAGAAGAGTTTGAATTTGAATGTAAACAGTGCCAAGAATACTGTTCAACAAATAAGGAGCTTAGCAAACATGAGCGTACCCACGAAGGCCATATACATAACTGTCGGTTTTGTCCATCCAAGTTTAACGAATTTCAGAACCTTAAACAGCATTATAAATCCTTACATCCCCTAGAGTGGAGACCTCTTGTTTGCGAAGAGTGTGGAAAAAGATTTGGTCTGGAACTCCATTTAAGGGAACATATGATACGGCATACAGACGAAAGACCATTTCAATGCGAATTTTGTCCTAATGCTTACAATAGAAAAGATACTGGCGGCAGCTTAAGAAAAATTGACGACGAAATTACCGTGAATGTGAACATTGCAGAAGATCCTTTTAGTCAAAGAAGCCACAAatcaACTGATGTTAAAATAGAAGCAAACACTATTAAGTTCGAAGTGGAAGATCTCAAGTTAGATCAAGCAAAACATGTGTATAAATGCGAGAAGTGCAATAAATCCTATTCAACTAAAAGAAGATTAAGTCAGCACAAGAGCttccacaatgaaaaaactcatCTCTGCGATCTTTGTccaaaaaagtatttgtttaGTCATATGCTGAAGAAACACAAAGAACTGTCACATGGAGACAAAAACCGAGTGTCTTGTGAAATTTGCGGTAAAAACTTTTGGACTAAGTACGCGCTAAGAGACCACATAAAGTTTTTACacgaaaaaaattttgaattcatttGTGATAAGTGTGGTAAAGGCTTTAGAGACAAACTTCACTTGACTCAGCATGAACAGACTTCCCATAAAGGTGTTACATACGATTGCGAGATATGCGGTCGGCCATTTCTAACGCAGAAATCCATGGAAAGGCATGTTGCGAAGCATGACCCAAATTACAAAGTACCGAAATACGATTGTGAACAATGCGGACAAGTCTTTACTACGATACAGTCTTTAAATAGGCATTTATTGAAGCATGTAAATGGCGTGCCAAAGTTCGTTTGTGAGCATTGCGGCAAGTCAGTGACTACTGCCAGTTCTCTCAGGGATCACATGAGAACTCACAATGGCGAGCGTCCATTCAAATGCGATATATGCCAGAAAACGTTTAATAGATCTGGGATGCTCCAGATTCACATGAGAGTACATACTAAGGAAAAGCCGTATGTTTGTAAATATTGCCTTAAAACTTTTACTCAAAGGGGGTCTTTGAAAATTCACGTAAGATATCACACAGGGGAGAGGCCTTATAGTTGTGTAAGATGCGAAGAGAAGTTTGTAAGTAAGACTGTGTTGGATAATCATTGTTGTcgttga
- Protein Sequence
- MKGTRSGALNKCENNGRFTCEHCGKSFTSNIFLKEHIVVVHTHEFRYFCKFCGKGFYMECRKRFHEKKVHEKLVPKKDSVPWSCDECGRVLANKYTYKQHKFLAHEREIKFFCDKCGKGFPLLSYLTQHAQVNHARNKPLMCSEENCGKVFKTKDALRRHKFIHSEDREFSCSFCPKTFIHIVSYKRHLREHKNGRKVYECDVCRKIVSSTTSLHDHMRTHTGEKPFTCPYCPKTFVSNKQLKVHIVVHTKEKKHVCRICDKRFTQRGTLKYVIQEEEFEFECKQCQEYCSTNKELSKHERTHEGHIHNCRFCPSKFNEFQNLKQHYKSLHPLEWRPLVCEECGKRFGLELHLREHMIRHTDERPFQCEFCPNAYNRKDTGGSLRKIDDEITVNVNIAEDPFSQRSHKSTDVKIEANTIKFEVEDLKLDQAKHVYKCEKCNKSYSTKRRLSQHKSFHNEKTHLCDLCPKKYLFSHMLKKHKELSHGDKNRVSCEICGKNFWTKYALRDHIKFLHEKNFEFICDKCGKGFRDKLHLTQHEQTSHKGVTYDCEICGRPFLTQKSMERHVAKHDPNYKVPKYDCEQCGQVFTTIQSLNRHLLKHVNGVPKFVCEHCGKSVTTASSLRDHMRTHNGERPFKCDICQKTFNRSGMLQIHMRVHTKEKPYVCKYCLKTFTQRGSLKIHVRYHTGERPYSCVRCEEKFVSKTVLDNHCCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -