Basic Information

Insect: Philopedon plagiatum
Gene Symbol: -
Assembly: GCA_963971165.1
Location: OZ020194.1:83842810-83847978[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.029 5.7 10.0 1.2 1 23 17 40 17 40 0.96

2 25 0.0092 1.8 11.6 1.9 3 23 48 69 46 69 0.96

3 25 0.006 1.2 12.1 0.2 3 21 78 98 77 101 0.86

4 25 0.00048 0.094 15.6 3.8 3 23 110 130 109 130 0.98

5 25 5.5e-06 0.0011 21.7 0.8 1 23 137 159 137 159 0.99

6 25 0.00035 0.068 16.0 0.7 1 23 166 188 166 188 0.94

7 25 2.2e-05 0.0044 19.8 0.7 1 23 194 217 194 217 0.97

8 25 7.1 1.4e+03 2.5 0.0 1 21 232 252 232 253 0.94

9 25 2.2e-06 0.00044 22.9 0.3 1 23 282 305 282 305 0.92

10 25 0.0012 0.23 14.4 0.1 2 23 314 336 313 336 0.88

11 25 2.7e-05 0.0053 19.5 0.8 1 23 343 366 343 366 0.97

12 25 1.7 3.2e+02 4.5 1.9 2 23 373 395 373 395 0.92

13 25 0.0041 0.79 12.7 0.2 3 23 404 427 402 427 0.88

14 25 9.7e-06 0.0019 20.9 2.0 1 23 434 456 434 456 0.98

15 25 3.2e-07 6.2e-05 25.6 0.4 1 23 463 485 463 485 0.99

16 25 1.6 3.2e+02 4.5 0.0 1 21 500 520 500 521 0.96

17 25 1.7e-05 0.0032 20.2 2.6 1 23 550 573 550 573 0.94

18 25 0.0045 0.88 12.5 0.2 2 23 580 602 579 602 0.92

19 25 0.001 0.2 14.6 0.6 1 23 609 632 609 632 0.97

20 25 5.8 1.1e+03 2.7 2.4 2 23 639 661 638 661 0.86

21 25 0.0021 0.4 13.6 0.3 2 23 669 693 668 693 0.90

22 25 0.0031 0.59 13.1 1.9 1 23 700 722 700 722 0.95

23 25 5.5e-06 0.0011 21.7 2.9 1 23 729 751 729 751 0.99

24 25 2.2e-05 0.0042 19.8 0.5 1 23 757 779 757 779 0.97

25 25 0.0025 0.49 13.3 1.5 1 23 785 808 785 808 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.029	5.7	10.0	1.2	1	23	17	40	17	40	0.96
2	25	0.0092	1.8	11.6	1.9	3	23	48	69	46	69	0.96
3	25	0.006	1.2	12.1	0.2	3	21	78	98	77	101	0.86
4	25	0.00048	0.094	15.6	3.8	3	23	110	130	109	130	0.98
5	25	5.5e-06	0.0011	21.7	0.8	1	23	137	159	137	159	0.99
6	25	0.00035	0.068	16.0	0.7	1	23	166	188	166	188	0.94
7	25	2.2e-05	0.0044	19.8	0.7	1	23	194	217	194	217	0.97
8	25	7.1	1.4e+03	2.5	0.0	1	21	232	252	232	253	0.94
9	25	2.2e-06	0.00044	22.9	0.3	1	23	282	305	282	305	0.92
10	25	0.0012	0.23	14.4	0.1	2	23	314	336	313	336	0.88
11	25	2.7e-05	0.0053	19.5	0.8	1	23	343	366	343	366	0.97
12	25	1.7	3.2e+02	4.5	1.9	2	23	373	395	373	395	0.92
13	25	0.0041	0.79	12.7	0.2	3	23	404	427	402	427	0.88
14	25	9.7e-06	0.0019	20.9	2.0	1	23	434	456	434	456	0.98
15	25	3.2e-07	6.2e-05	25.6	0.4	1	23	463	485	463	485	0.99
16	25	1.6	3.2e+02	4.5	0.0	1	21	500	520	500	521	0.96
17	25	1.7e-05	0.0032	20.2	2.6	1	23	550	573	550	573	0.94
18	25	0.0045	0.88	12.5	0.2	2	23	580	602	579	602	0.92
19	25	0.001	0.2	14.6	0.6	1	23	609	632	609	632	0.97
20	25	5.8	1.1e+03	2.7	2.4	2	23	639	661	638	661	0.86
21	25	0.0021	0.4	13.6	0.3	2	23	669	693	668	693	0.90
22	25	0.0031	0.59	13.1	1.9	1	23	700	722	700	722	0.95
23	25	5.5e-06	0.0011	21.7	2.9	1	23	729	751	729	751	0.99
24	25	2.2e-05	0.0042	19.8	0.5	1	23	757	779	757	779	0.97
25	25	0.0025	0.49	13.3	1.5	1	23	785	808	785	808	0.97

Sequence Information

Coding Sequence: ATGCTTAAAAGACACGTCGATTTAATTCACCGGGGAAGAAGGGCGAAGTTTAAGTGCGAAACTTGCGGGGAAAACTGTGTAACTAGAGAGGCCATGGAATACCATAATAAATCAGTTCATCTTAAGgagtttaatatattttgtgatATATGCAAGACCGGATTTATTCATGAATATCAGATGAAACAGCACACAAAGAAGGTGCACGAACGCGACGTAACCATTGTGGCTTGCACAGAACAAGGatgtaacaaagtttttaaatcaGCTAGTGGTTTGAAATACCATTTTGACGCTGAACATTCTCAAGAAAGACCTGAATTACTTTGCGGATACTGTGGACAAACTTTTGACCATTCGCGTAAATTTAGGAAACATCTTCGGTATCACGAAAAGGGGCGTCCGTCTTATAAGTGTAACCTCTGTGAGAAAACGCTTAAGTCTAAAGACAGTTTGGATGCTCACATTCGTACTCACACAGGAGAGAAGCCGTATTATGTATGTGAGCATTGCGGACAGGGTTTTAGTCGAAAGAACGTCCTACAGGATCACTTCGTAGTTCATACTAAAGAAAAACCTTATGCTTGTAAATTTTGTGATAAAAGATATACTCAGCGGTCTCCGCTTGCTATACATATGAAACGAATCCATCCAGAATTTACAACCCAAAAACCAAACTCTACTTGGGTAGCCTATCAATGTGTTCAGTGTGCTTTAATTGTCGAAACCTATGAAAAATTGGTTGTACATCAGAAAGAATGTTCACTTTATAACAGTACGACAGTGAAATATAATAAAACCGAAAATTCtgctataaaaaaagaaaaggaagAGCGAACTCGTTTCGTTTGCCCGGAGTGTGGAAAATCATATTCGCAACAGGAATATCTGATTAAACATGTTTACTATGTTCATAAGCAACAGGAATTGAAATTGATTTCCTGTAAAGAATGCGGAAAAACATTTGCTAGAGACTCGATCTTAAAGCGACATGTCGATGCAGTTCACCGGGGAATTGTCGGTTACTTCAAGTGCGAAATTTGTGGGGAAAACTACAGAAGCAAGCGTACTTtggaaaatcacaaaaaaattatccaTTTTAAGACGTTTAATGAATACTGTGATATTTGCAATAAGGGATTCCTTTGTAAAAGCCAATTAGACATTCATAGAAAATCGGTGCATGAAGGGAAGGTGAATATCATAGCTTGCACACAAGAAGGATGTAAAAAAGCATTTAGGTCTACAGGGAATTTAAGATACCATATATTCGCCGAGCACACTACCGATAAACCTCAATTTTCGTGTGGAGAATGTGGAAAAACGTACAACCATCCAGTAAGCTTTCGAAAGCATCTCCGACTTCATAAAAAAGGGCGTTCTCAGTACAAGTGCCCTTATTGCGAAAAAACCGTAACTACTAAAGATAGTTTGGCAAATCATATACGCATTCACACAGGCGAAAAACCCCAAAAGCAAAATTATACCTGGGTAGCCTATCAATGCGTTCAGTGTGCGTTGATTGTGGACACTTATGAAAAATTGACTGCTCATCAGAAAGACTGTTTCCTTCATACTCATAAGGTAGTAAAGCATATTAAATGCGAAGATTCTGCtgtaaaaaatgaaaacaaaaagcAAACTCGTTTCGTTTGCTCGGAATGTGGAAAATCGTATTCCAGACACGCGGACCTAACTAAACATGTTCACTATATTCATAACCGACGGGAATTGACTACCTGTAAAGAATGCGGAAAAACATTTGCTACAGATTGGATCTTAAAGCAACATGTCGACACAATACATCGAGGAATCATCAGTTACTTTAAGTGCGACATTTGTGGTGAAAACTACAAAGGCAAGCGTACCATGGAAAATCACAAAAAAGTTGTCCATTTTAAGACGTTTAACAAATACTGTGATATTTGCAACAAAGGATTCCTTTGTAAAAGTAGgttagaaattcataaaaaatcgGCACATGGAGGGGAGGTTACTATCATTTCTTGCCCAGAGGAAGaatgtaaaaaaacatttaaatctacGGGACAGTTAAGGTACCATAAATTGGCCGATCACACTCCAGATAAACCTCAGTTTTTATGTGGAAAATGTGGAAAAACGTACAACCATCCTGCTATCTTTCGAAAGCACCTGCGACTTCATGAAAAAGGGTGTTCTCAGTACAAGTGTCCTCATTGCGAGAAAATTGTAACTACAAAAGTTAGTTTAAGACATCATATACGCATTCATACAGGTGAAAAGCCGTACATTTGCGAACTATGTGGCCTAAGTTTTAACAGAAAAAGTAATGTTAAGAGTCATAAGCTGgttcatacaaaagaaaaatcttttGCGTGTAAGTTTTGCGACAAAAGATATTTCCAGCGAGGTCCTCTAAGTCTGCATATTCGTAGGTTTCATGCAGGGTTGGTCAAAGAAACCGTGAACCATAAACAAAGAGATGATAAAAAATGCTCATCTGAAATCAACAGATAA
Protein Sequence: MLKRHVDLIHRGRRAKFKCETCGENCVTREAMEYHNKSVHLKEFNIFCDICKTGFIHEYQMKQHTKKVHERDVTIVACTEQGCNKVFKSASGLKYHFDAEHSQERPELLCGYCGQTFDHSRKFRKHLRYHEKGRPSYKCNLCEKTLKSKDSLDAHIRTHTGEKPYYVCEHCGQGFSRKNVLQDHFVVHTKEKPYACKFCDKRYTQRSPLAIHMKRIHPEFTTQKPNSTWVAYQCVQCALIVETYEKLVVHQKECSLYNSTTVKYNKTENSAIKKEKEERTRFVCPECGKSYSQQEYLIKHVYYVHKQQELKLISCKECGKTFARDSILKRHVDAVHRGIVGYFKCEICGENYRSKRTLENHKKIIHFKTFNEYCDICNKGFLCKSQLDIHRKSVHEGKVNIIACTQEGCKKAFRSTGNLRYHIFAEHTTDKPQFSCGECGKTYNHPVSFRKHLRLHKKGRSQYKCPYCEKTVTTKDSLANHIRIHTGEKPQKQNYTWVAYQCVQCALIVDTYEKLTAHQKDCFLHTHKVVKHIKCEDSAVKNENKKQTRFVCSECGKSYSRHADLTKHVHYIHNRRELTTCKECGKTFATDWILKQHVDTIHRGIISYFKCDICGENYKGKRTMENHKKVVHFKTFNKYCDICNKGFLCKSRLEIHKKSAHGGEVTIISCPEEECKKTFKSTGQLRYHKLADHTPDKPQFLCGKCGKTYNHPAIFRKHLRLHEKGCSQYKCPHCEKIVTTKVSLRHHIRIHTGEKPYICELCGLSFNRKSNVKSHKLVHTKEKSFACKFCDKRYFQRGPLSLHIRRFHAGLVKETVNHKQRDDKKCSSEINR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -