Ppla072783.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- GLIS3
- Assembly
- GCA_963971165.1
- Location
- OZ020194.1:84114475-84123920[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 3.2e-06 0.00062 22.5 0.2 1 23 12 34 12 34 0.98 2 25 1.7 3.3e+02 4.4 0.5 2 12 47 57 46 66 0.88 3 25 3.4e-05 0.0067 19.2 1.6 1 23 73 95 73 95 0.98 4 25 3.1e-05 0.0061 19.3 4.1 1 23 101 125 101 125 0.97 5 25 1e-06 0.0002 24.0 0.4 1 23 131 153 131 153 0.98 6 25 0.0006 0.12 15.3 1.0 3 23 192 213 190 213 0.94 7 25 4e-05 0.0078 19.0 1.5 1 23 218 240 218 240 0.98 8 25 0.37 72 6.5 4.8 2 23 251 270 250 270 0.90 9 25 1.2e-05 0.0023 20.7 0.3 1 23 277 299 277 299 0.98 10 25 1.9e-05 0.0036 20.0 2.8 1 23 305 327 305 327 0.98 11 25 1.9e-06 0.00036 23.2 0.1 1 23 333 355 333 355 0.98 12 25 0.25 48 7.1 1.4 1 16 361 376 361 381 0.86 13 25 7.9e-06 0.0015 21.2 0.1 1 23 403 426 403 426 0.96 14 25 7.3e-06 0.0014 21.3 0.9 1 23 432 455 432 455 0.94 15 25 0.0033 0.64 13.0 0.9 2 23 461 482 461 482 0.97 16 25 0.0011 0.22 14.4 2.0 1 23 489 512 489 512 0.96 17 25 0.0023 0.44 13.5 1.5 1 23 518 541 518 541 0.97 18 25 4.4e-05 0.0085 18.9 2.4 2 23 549 570 548 570 0.97 19 25 0.0014 0.28 14.1 2.1 3 23 578 599 576 599 0.94 20 25 9.9 1.9e+03 2.0 1.2 2 20 605 623 604 626 0.85 21 25 0.72 1.4e+02 5.6 1.4 2 23 637 656 637 656 0.76 22 25 6.8e-07 0.00013 24.6 0.6 1 23 663 685 663 685 0.98 23 25 0.00061 0.12 15.3 3.9 1 23 691 713 691 713 0.98 24 25 5.2e-07 0.0001 24.9 0.4 1 23 719 741 719 741 0.98 25 25 0.0076 1.5 11.8 4.0 2 23 748 770 747 770 0.93
Sequence Information
- Coding Sequence
- ATGGAAATTAAACATAGCACAGCGGAGCAACGTTTCGTATGCGATGTTTGTGGCAAAGAATTTCCTTTGGCAAGTTATCTAAAAAGGCATCAGCTGCGCCATCAGGAAAACccccagaaaaaaatattaacacccACCGAATGTTCCATCTGCAAAAAGTCCTATGTCAGAATCAACAGGCACTATAGAGAGTTTCACTCGAACGAAGGAGCGAGTTACATGTGCGACCTCTGCGGCCAGAAATTTCGACAAAGTTTCGAGCTGAAGCTGCACACAATGCGCCACAAGGGAGAGAAACCCCACAAATGCTCCTACGAGGGTTGCGAGAAAAGCTTTGTTAgaaaacaacatttaattttgCACATGCGAAGCCACACCGGAGAAAAACCGTACGAATGTAAGTTATGCGGGAAAACTTATACTCAAAAACCTACTCTGGTGGTACACATGAGGGGGCATCTTGGCGAGAGACCATATGAGTGTGACCTTTGTGTTAGTAAATTCGCTTCGAAGCAAAGCAAGACGAACTACGTCATTCACAACAAAAGACATACGGAGGAATATGTTGTGCACTGCGAACTGTGCAACGAAGGATTTGTTACCAAAACTGAGTACCGAAGACATATGGATGTTAAGCATATACGAAAAGAATTTGTCTGTGATACGTGTGGAAAAAGTATTTCCAGTGAGCGGCATTTAAAAGAACATAGGAGAATTCATGAGGAAAAGTATGCAGATAGATATTTCCAGGAATGTAATGTTTGTAATAAGAAGTTTAGGCATCTTAAGAAACACTACAGGGAATTTCACGAAGGTGATGGTAACAACTACGTTTGCGACATTTGCGGCAGGTCATTCCGAGGCGAAAACAGCTTCAAAGTCCACCTTAAGATCCACAGAGGCGAAAGGCCTTTTCGATGCGAGATTTGTCACAAAGAGTTCTACTCGAAGCAGTACCTGACAGTGCACTGGAGGATTCATACTGGCGAAAAGCCCTATGAGTGTAAGGTATGTGGCAAAGGATTTGCTCAGAAGCCCCCTCTGAAGGTGCACATGAGGCTGCACTCGGGAGAAAGGCCTTATGAGTGCGAATTTTGCGGAGAAAAATTTGTTTCGAAGCAGAAGATGAACTTTCACAAGAAGGAAGTTGAATTTAGCGACCACTCCAAAGATGATAATGAGAAGCGAGAACTTGAACGCAAAAAATTTGTATGCCCTAATTGTGGAAAGGAATTTGACCGAAGTAACGGATTGTCTAAACACATTGCCTCGGTTCATTCTGAGGAACGACCGTATCAGTGCCAGATTTGCGAGAAAACCTTTAAACTAAAAGATTACCTTAATAACCATATGGCAGCTTACCATCTTGCTCAAGAACGTCAATGTGAAGTTTGcaataaaattcttaaaaatgaaaGAACATTGAAGTTGCATCTAAAGTTGCACGATCCAAATAGAAAGACATACTCATGTGCACTTTGTAATCGTGAATTCACAAAAAGTCACACTGTGACTAGACACATTCAACAAGTCCATCTTAACGAACGACCATTCCAGTGTGACACTTGTGACCAGTGGTTTAAATCGAAAGGTACTCTTAAAACGCATAAACAGGTACAACATCCAGAAAATCCAGTGCggttaaaatgtaaatattgcaAAGAAACTTTTAAGTATAGATCGAGCTTAGCGTTGCACGTTAAGAaacatttaaatcagtacttAAAATGTTGTCAGATTTGCGACAAAGAGTTTTATGTAGCACGAGATTATAAAGTTCATATGCAGTCGAAGCATGAAGTTCGTACGGTGCCCtgtaaaatttgtaacaaaTGGTTCCCTACAATGAAACGCATGCTCCAACACCAAGCATGTCATGACGAAGCCAATAAAAAGATCAGCTTCGAGGAGTGTACCATTTGCACTAAGAAATTCGTAAATCTAAGAATGCACGTCAAAAATTTTCACGAAACTGATGgaaaaaactttgtatgcgattactgtggtaaatattttagagaCAAAAGTGGTTTGAAATTGCACCTAATGATTCATAAAGGAATTAGACCTCATGAGTGCAGAATATGCGGTAAAAGATTCCTTACAAACCAACATTTGGTACTGCATTTACGCACTCATACTGGAGAAACCCCATTTGAGTGCGAAGTCTGTGGGAAAATGTTTACTAGAAAGCCGGGATTAAAGTTACACATGAAATTGCACGAGGGAGAAAAATCAGTCAGATGTGAATTTTGTGATACAACATTTTATGATAGAAGATACCTTAGGAGACACTGTAGGGTCAGGCATAATGTAATGTATAATTCAAAAACTTTGTAA
- Protein Sequence
- MEIKHSTAEQRFVCDVCGKEFPLASYLKRHQLRHQENPQKKILTPTECSICKKSYVRINRHYREFHSNEGASYMCDLCGQKFRQSFELKLHTMRHKGEKPHKCSYEGCEKSFVRKQHLILHMRSHTGEKPYECKLCGKTYTQKPTLVVHMRGHLGERPYECDLCVSKFASKQSKTNYVIHNKRHTEEYVVHCELCNEGFVTKTEYRRHMDVKHIRKEFVCDTCGKSISSERHLKEHRRIHEEKYADRYFQECNVCNKKFRHLKKHYREFHEGDGNNYVCDICGRSFRGENSFKVHLKIHRGERPFRCEICHKEFYSKQYLTVHWRIHTGEKPYECKVCGKGFAQKPPLKVHMRLHSGERPYECEFCGEKFVSKQKMNFHKKEVEFSDHSKDDNEKRELERKKFVCPNCGKEFDRSNGLSKHIASVHSEERPYQCQICEKTFKLKDYLNNHMAAYHLAQERQCEVCNKILKNERTLKLHLKLHDPNRKTYSCALCNREFTKSHTVTRHIQQVHLNERPFQCDTCDQWFKSKGTLKTHKQVQHPENPVRLKCKYCKETFKYRSSLALHVKKHLNQYLKCCQICDKEFYVARDYKVHMQSKHEVRTVPCKICNKWFPTMKRMLQHQACHDEANKKISFEECTICTKKFVNLRMHVKNFHETDGKNFVCDYCGKYFRDKSGLKLHLMIHKGIRPHECRICGKRFLTNQHLVLHLRTHTGETPFECEVCGKMFTRKPGLKLHMKLHEGEKSVRCEFCDTTFYDRRYLRRHCRVRHNVMYNSKTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -