Ppla075284.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philopedon plagiatum
Gene Symbol
PGBD3
Assembly
GCA_963971165.1
Location
OZ020195.1:28322149-28330059[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7e-08 8.2e-06 27.8 0.0 8 38 23 52 19 58 0.89

Sequence Information

Coding Sequence
atgccAAAGGTAAAAAAGGACAATAAAacttatacaaaaaaatacactgAAGTTGATGTGCGTAATGCGTTGGAGGCAATTAAAAATGGCCTAAGTCAAAGAAAGGCTGGCGAACAATTTAATGTACCAAGAGCGACCCTTCAATTTAGGGTAAGTGAAAAATTTAACGACAAAACCTCCCACGGTCCAAACCCTATTCTTTCGGTAGATGAAGAAAGACAGCTAAAAGCATGGATCTTTGCATGTCAAAGAAAGGGATTTCCGCTAAGAATTGATGATGTTAAAGAATCAGTTAAAGGTTTTTTGGACGCTTATCCCCGTGATAACCCATTTTCGGAAAACAGACCAGGAAGAGGATGGTATAAAGCGTTTCTACAACGGCATCCAGATATAGTTCTACGAACTCCAGAGTCCATTACAGCCGCAAGCtcaaatatttctgaaaaggACATTCGGAAATGGTTCGCTGGGATTGAGGATTATCTAAATGAAAAAGGATATAGTGACGTACTTAAAGACCCTTCACGTGTTTTCAATGGTGACGAAACTTGCTTCCTCCTCTgcccgaaaaataaaaaagtgctaGCCGTAAGAGgaagcaaaaatatttatgaaattgaGCATAATCCTAAAGTGAATTTAACTGTCATGTTCACATTTTCGGCTGCAGGAGAAACAACACCACCTATGATTATTTACCCTTACAAAAGATTACCGTCAGAGGTTTTGAAATCGGTACCTGATAACTGGGGTATAGGGTGTAGCGACTCAGGATGGATGAAGAacgaaaatttttttgaatacATTGGAAATGTTTTCTATAAGCATTTGGTCGCCAAAAATACTACATTTCCAATAATATTATTTGTGGATGGACATAAAACCCATCTCACGCTTCAAACTAGTCAATTATGCTCTGATTTAAACATAATATTGGTAGCTTTGTACCCAAACGCTACCAGAATTATGCAACCAGCAGACGTTGGTGCATTTAAACCTCTTAAAAATCATTGGAATAAGGCGGTCCTAGATTTTAGAAGAGAAAACCCCAACGCTGTTGTTACAAAGGAAAACTTTGCGTTGGTATTAAACGCAGCACTTATTCAGTTAAAATCAGAGTGTGTCATAAATGGATTCAGAGCTTCAGGACTGTTTCCATGGGATCCCTCAGGAATTGATTACTCGAAATGTCTGGGAAAGGTTACCAATGAAGTTCAAGAATGCCAAGAAAGTATAGCAGATGGTGTTACAATAACacGTGGTTTTACTTTGTCGGAGGCATTGGACATTGCATATGGGGACGACGGCGTGGAGAATCAAATTGATGAGATATTTATAGAACCACCTGATATAAATATCGAAACCGACGAAGATTCTGCAGATGAGGATAGTGGGGGGATGGTTCACAATCTAACCGGTCGTCAACTGCGGGCAGCTGCAGAAGtcaagttttttaacaataaacgaATAGGTGTCGATTATGATGATCAGCAAGGGCCGTCAACATCTGTAGAAGAAATCACTGACAAAGAACCATCTTCAACAACTTCAGCACAGCAAGCAGAGCCATTTTTACAAGGAGAAATTTGGACTCAAAAGCGTTTGAAGGGCAAGTCAAAGCCTGAATggatacatggtgatttagaacaAGTCGAACATTTATTTCCTCCTGCTGACTTTAGGcgatttgaaaatttatcaTGTGTGGAATTATTTGAGTTATTCATCGATAATGAAACCGTACAGTATATCGGTGAAGAAACTCAAAGATATGCTCAATTTATAAATGAAGCGGATCCAAAAGTTACCATAGATGATGTTAAGTGTTTTAttggtattttgattttgaGTGGATACAATCCATTACCTTCGAAAAGAATGTATTGGGATACGAAAGATGATGTAAAAAACATTCTTGTGAGTAACGCCATGCGGCGAAacagatttttacaaatacagagATTTCTTCACTTTCAAGATAACACAAAAACTGATGCATCTGATAAAGCCTGGAAGATAAGGCCTCTCATGGACAGAATAAAGgataaatgtttacaaaattttgtaccGGTGAAAGAACTGGCTTACGACGAATCGATGATCAAATATTACGGTCGCCACGGATGCAAGCAATTCATCCGTGGTAAACCAATtcgatttggttacaaaatgtGGTCCCTAAATACTAAAGAGGGATATTTAGTCAATTTTGACTTATATCAAGGTACCAATCCACGTGGAAATAAAACTTACGACACCTTATTTGGCAAAGCTGCTGCTCCTTTGGTGCTAATGTTTGACGaattacatgaaaaaaattTGCGTTATAATGTACATGTTGACAACTTGTTTACGGGATGCAATTTATTTGCCTACTTACGACATTTAGGCTATGAGGCTGTTGGTACGATGAGGGATAATCGTATCCCAAAGCCTTGTCCACTGGAGGAAAAGAAAAACTTTGCTAAAAGAAAAAGGGGTGAAAGCCagcatattttagaaaaaagtgaTGGGATACTATTTGTAAGGTGGATGGACAATTCAGTTGTAACCATGGCTTCGACTGGCCCTGGAGCGTCGCCTTTTGCAACTGTAAAAAGGTACTCTCAGAAAGAGAAGCGAAATATTTTAGTCAATCGACCCAATTGTATCGCTCAGTATAATAACAACATGGGTGGAACAGACCTCATGGACGAATGTGTGGCAAATTACAGAATACATATTCGCAGCAAAAAATGGTATTGGCCTATTGTAACCTGGCTCTTGGATATAGCAATAAACAATGCATGGCTTTTATATAGACACAATCATAAAGGAGTTTCAAATGTGGCATTTCGTAGAGAGATATCGCAAGTCTATTTGTCGCGTTATGGTATAGCTCCAAAACAACCTGGCAGGATATCGTTAACTCGCAACATACTTCCAGACATACGATTTGATCGTATGGACCATTTCGTTGCTCCCTGCCAAAGAAGACGGTGTGCTGGACAAGGATGCAAATCGTTTGGGCGAACTATGTGCCAAAAATGTAACGTTGGGCTTTGCGTGGCATGTTTTGCAACTTACCATACCAAAtag
Protein Sequence
MPKVKKDNKTYTKKYTEVDVRNALEAIKNGLSQRKAGEQFNVPRATLQFRVSEKFNDKTSHGPNPILSVDEERQLKAWIFACQRKGFPLRIDDVKESVKGFLDAYPRDNPFSENRPGRGWYKAFLQRHPDIVLRTPESITAASSNISEKDIRKWFAGIEDYLNEKGYSDVLKDPSRVFNGDETCFLLCPKNKKVLAVRGSKNIYEIEHNPKVNLTVMFTFSAAGETTPPMIIYPYKRLPSEVLKSVPDNWGIGCSDSGWMKNENFFEYIGNVFYKHLVAKNTTFPIILFVDGHKTHLTLQTSQLCSDLNIILVALYPNATRIMQPADVGAFKPLKNHWNKAVLDFRRENPNAVVTKENFALVLNAALIQLKSECVINGFRASGLFPWDPSGIDYSKCLGKVTNEVQECQESIADGVTITRGFTLSEALDIAYGDDGVENQIDEIFIEPPDINIETDEDSADEDSGGMVHNLTGRQLRAAAEVKFFNNKRIGVDYDDQQGPSTSVEEITDKEPSSTTSAQQAEPFLQGEIWTQKRLKGKSKPEWIHGDLEQVEHLFPPADFRRFENLSCVELFELFIDNETVQYIGEETQRYAQFINEADPKVTIDDVKCFIGILILSGYNPLPSKRMYWDTKDDVKNILVSNAMRRNRFLQIQRFLHFQDNTKTDASDKAWKIRPLMDRIKDKCLQNFVPVKELAYDESMIKYYGRHGCKQFIRGKPIRFGYKMWSLNTKEGYLVNFDLYQGTNPRGNKTYDTLFGKAAAPLVLMFDELHEKNLRYNVHVDNLFTGCNLFAYLRHLGYEAVGTMRDNRIPKPCPLEEKKNFAKRKRGESQHILEKSDGILFVRWMDNSVVTMASTGPGASPFATVKRYSQKEKRNILVNRPNCIAQYNNNMGGTDLMDECVANYRIHIRSKKWYWPIVTWLLDIAINNAWLLYRHNHKGVSNVAFRREISQVYLSRYGIAPKQPGRISLTRNILPDIRFDRMDHFVAPCQRRRCAGQGCKSFGRTMCQKCNVGLCVACFATYHTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-